CX294108

Overview
NameCX294108
Unique NameCX294108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.047e-38
Identity = 75/137 (54.74%), Postives = 91/137 (66.42%), Query Frame = 3
Query:  138 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYYGRGP 539
            CG+    CG       +  G++G++I+R MF D+L HRN+  CP +GFYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT  ETTGGW  AP G YAWGYCY+R+   P + YC      PC    +YYGRGP
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGA-YCVPSAQWPCAAGRKYYGRGP 179          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.672e-36
Identity = 71/118 (60.17%), Postives = 83/118 (70.34%), Query Frame = 3
Query:  192 GELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGP 539
            G+L  IISR  F+D+L HRND  CPARGFYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT  ETTGGW  AP G Y+WGYC+ +Q   P+S+YC      PC     YYGRGP
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCF-KQEQNPSSNYCSPSAEWPCASGKSYYGRGP 185          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.184e-36
Identity = 70/118 (59.32%), Postives = 83/118 (70.34%), Query Frame = 3
Query:  192 GELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGP 539
            G+L  IIS   F+D+L HRND  CPARGFYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT  ETTGGW  AP G Y+WGYC+ +Q   PASDYC      PC    +YYGRGP
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCF-KQEQNPASDYCEPSATWPCASGKRYYGRGP 200          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.865e-36
Identity = 75/136 (55.15%), Postives = 88/136 (64.71%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGP 539
            CG G  C  +  G      +L  +ISR  F+ +L HRND  CPA+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT  ETTGGW  AP G YAWGYC++R+  R  S YC      PC    QYYGRGP
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE--RNPSTYCSATPQFPCAPGQQYYGRGP 189          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.354e-36
Identity = 69/115 (60.00%), Postives = 86/115 (74.78%), Query Frame = 3
Query:  204 KIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY---RYCPCPLPGQYYGRGP 539
            KIISR MF+ +L HRN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT  ETTGGWP AP G YAWGYC++++   P+S+YC    RY PC     YYGRGP
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKE-RNPSSNYCAPSPRY-PCAPGKSYYGRGP 116          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.354e-36
Identity = 76/138 (55.07%), Postives = 91/138 (65.94%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            CG G  C  +  G  T   GG+LG IIS  MF+ +L HRND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y+GRGP
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP-GDYCTPSGQWPCAPGRKYFGRGP 189          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.084e-35
Identity = 74/128 (57.81%), Postives = 86/128 (67.19%), Query Frame = 3
Query:  159 GERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVS-RPASDYCYRYCPCPLPGQYYGRGP 539
            G  D G   D G L  II +  F+ LL  RND RCPA GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT  ETTGGWPDAP G YAWGYCY+++++ +P  D    Y  C    QY GRGP
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNY-QCVAGKQYCGRGP 202          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.084e-35
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 3
Query:  189 GGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            GG+LG IIS  MF+ +L HRND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y+GRGP
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP-GDYCTPSGQWPCAPGRKYFGRGP 194          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.416e-35
Identity = 77/146 (52.74%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYYGRGP 539
            CG G  C  + +G G          +DG  +G I+ R++FE LL HRND  CPARGFYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT  ETTGGWP AP G ++WGYC+ +Q   P SDYC      PC    +YYGRGP
Sbjct:   63 CGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCF-KQEQNPPSDYCQPSPEWPCAPGRKYYGRGP 203          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.849e-35
Identity = 76/141 (53.90%), Postives = 89/141 (63.12%), Query Frame = 3
Query:  138 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGP 539
            CGS     G  C  +  G      +L  +ISR  F+ +L HRND  CPA+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT  ETTGGW  AP G YAWGYC++R+  R  S YC      PC    QYYGRGP
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE--RNPSAYCSATPQFPCAPGQQYYGRGP 188          
The following BLAST results are available for this feature:
BLAST of CX294108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHIB_VITVI3.047e-3854.74Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_BRANA1.672e-3660.17Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_ARATH2.184e-3659.32Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_PHAVU4.865e-3655.15Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIT_CARPA6.354e-3660.00Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_TOBAC6.354e-3655.07Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI6_POPTR1.084e-3557.81Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_TOBAC1.084e-3558.82Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_ORYSJ1.416e-3552.74Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_PHAVU1.849e-3553.90Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05011B10SK AbsAOv1 Citrus clementina cDNA clone C05011B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294108 ID=CX294108; Name=CX294108; organism=Citrus clementina; type=EST; length=560bp
AATTCGGCCATTTCGGCCGGGGACACCAAGTAAAGGATAATTGATATCAT
AACTCTTGCTTTAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCT
AGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCG
TTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTG
GGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGCATAGAAA
TGATGTACGATGCCCTGCCAGAGGCTTCTACACTTACGATGCTTTTATAG
AGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATG
CGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCGATGAAACTAC
TGGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCT
ATATTAGGCAAGTTAGCCGCCCTGCGTCCGACTACTGTTATCGTTACTGT
CCATGTCCTTTGCCAGGGCAATACTATGGCCGAGGTCCATTCACTCACTT
GGATTGCATT
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