CX294113
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294113 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.105e-24 Identity = 60/117 (51.28%), Postives = 71/117 (60.68%), Query Frame = 2 Query: 92 KDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYNKKQ 442 K K E + A K+ A KA K + K A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP KAVSAVGKA G KWK+++D ++YEK M AYNKKQ Sbjct: 5 KSKTESKRADPKLAVNKKGAATKARKPAGKG-----KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQ 116
BLAST of CX294113 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.180e-23 Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 2 Query: 110 VKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYNKKQ 442 +K + +A K +K + K+TK A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT +YEK + AYNKKQ Sbjct: 1 MKGGKSKAKSDNKLAVKKQAADTKKTKK---AVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQ 108
BLAST of CX294113 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.552e-20 Identity = 56/127 (44.09%), Postives = 71/127 (55.91%), Query Frame = 2 Query: 59 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYNK 436 MK + KGA K D VK SK + K K K A KDPNKPKR PSAFFVF+EEFRK +K+++P K+V+AVGKA G++WKSL++ L+Y K + AYNK Sbjct: 1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
BLAST of CX294113 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.034e-19 Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 2 Query: 122 EDRAAGKRKAVLKASKSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYNKK 439 E + A + AV K ++ K K K KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++ +YE + AYNKK Sbjct: 9 ESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116
BLAST of CX294113 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19 Identity = 54/126 (42.86%), Postives = 68/126 (53.97%), Query Frame = 2 Query: 59 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYNK 436 MK + KGA K D VK + G K K K A KDPNKPKR PSAFFVF+ EFR+ +KQ++P K+V+AVGKA GE+WKSL++ +Y K + AYNK Sbjct: 1 MKGAKSKGAAKADAKLAVK-----SKGAEKPAAKGKKGK---------AGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112 The following BLAST results are available for this feature:
BLAST of CX294113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294113 ID=CX294113; Name=CX294113; organism=Citrus clementina; type=EST; length=624bpback to top |