CX294113

Overview
NameCX294113
Unique NameCX294113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig542 contig Ccv1_Contig542:1..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294113 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.105e-24
Identity = 60/117 (51.28%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   92 KDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYNKKQ 442
            K K E  +     A  K+ A  KA K + K       A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP  KAVSAVGKA G KWK+++D              ++YEK M AYNKKQ
Sbjct:    5 KSKTESKRADPKLAVNKKGAATKARKPAGKG-----KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQ 116          
BLAST of CX294113 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.180e-23
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  110 VKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYNKKQ 442
            +K  + +A    K  +K   +  K+TK    A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT                +YEK + AYNKKQ
Sbjct:    1 MKGGKSKAKSDNKLAVKKQAADTKKTKK---AVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQ 108          
BLAST of CX294113 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.552e-20
Identity = 56/127 (44.09%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   59 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYNK 436
            MK  + KGA K D    VK                SK + K  K  K  A KDPNKPKR PSAFFVF+EEFRK +K+++P  K+V+AVGKA G++WKSL++              L+Y K + AYNK
Sbjct:    1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111          
BLAST of CX294113 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.034e-19
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  122 EDRAAGKRKAVLKASKSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYNKK 439
            E + A  + AV K   ++ K  K     K  KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++               +YE  + AYNKK
Sbjct:    9 ESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116          
BLAST of CX294113 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 54/126 (42.86%), Postives = 68/126 (53.97%), Query Frame = 2
Query:   59 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYNK 436
            MK  + KGA K D    VK     + G  K   K  K           A KDPNKPKR PSAFFVF+ EFR+ +KQ++P  K+V+AVGKA GE+WKSL++               +Y K + AYNK
Sbjct:    1 MKGAKSKGAAKADAKLAVK-----SKGAEKPAAKGKKGK---------AGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112          
The following BLAST results are available for this feature:
BLAST of CX294113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN3.105e-2451.28HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI1.180e-2349.55HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE3.552e-2044.09DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA1.034e-1947.22HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT8.749e-1942.86HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC05011C03SK AbsAOv1 Citrus clementina cDNA clone C05011C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294113 ID=CX294113; Name=CX294113; organism=Citrus clementina; type=EST; length=624bp
TACGGCCGGGGGTGTTCTTCGCCTCTCTTCTCTACGTCCAGGCATATCGC
TTCTGAAAATGAAGGTTACCAGGGGCAAAGGAGCAGTCAAGAAGGACAAA
AATGAAGTAGTGAAGCCTGTTGAGGACAGAGCTGCAGGAAAGCGAAAGGC
TGTGCTTAAAGCTAGTAAGAGTAGCAACAAGCGCACCAAGAATGTCAAGT
CAGCAAAGAAAGACCCTAACAAGCCGAAGAGGCCTCCTAGTGCTTTTTTT
GTTTTCCTAGAAGAGTTCAGAAAGGTTTACAAACAAGAGCATCCCAATGT
TAAAGCTGTCTCAGCTGTGGGGAAAGCTGGGGGAGAGAAATGGAAGTCGC
TGACTGATGCAGAAAAAGCCCCATTTGAAGCAAAAGCAGCAAAAAGGAAA
TTGGATTATGAAAAGCTGATGACAGCATACAACAAGAAACAGGAAAGTAC
TGAAGATGAAGATGAAGAGGAGTCTGAGAAGTCAAAATCCGAGGTGCATG
ACGACGACGATGATGAAGAAACTTGAGAGGAGGATGAAGAGGAGGACGAC
GACTAGATTCGGAGCGCTACTGGTATAGTTCTTTGCTTATCAGAAAAATC
TGACGTGTTGACATGCATTGGTAT
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