CX294953

Overview
NameCX294953
Unique NameCX294953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7769 contig Ccv1_Contig7769:164..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.350e-32
Identity = 69/149 (46.31%), Postives = 104/149 (69.80%), Query Frame = 3
Query:  270 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701
            +EE  RL++IR+T+MQ+  DRGY V   E++ + E+F A+FG+       +R DL +  A  +D +DQ++VFFP+E KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ K+ LE F + ELL+NI EH LVPE  V+T
Sbjct:    4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMT 152          
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.350e-32
Identity = 69/149 (46.31%), Postives = 104/149 (69.80%), Query Frame = 3
Query:  270 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701
            +EE  RL++IR+T+MQ+  DRGY V   E++ + E+F A+FG+       +R DL +  A  +D +DQ++VFFP+E KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ K+ LE F + ELL+NI EH LVPE  V+T
Sbjct:    4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMT 152          
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.350e-32
Identity = 69/149 (46.31%), Postives = 104/149 (69.80%), Query Frame = 3
Query:  270 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701
            +EE  RL++IR+T+MQ+  DRGY V   E++ + E+F A+FG+       +R DL +  A  +D +DQ++VFFP+E KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ K+ LE F + ELL+NI EH LVPE  V+T
Sbjct:    4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMT 152          
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4)

HSP 1 Score: 136.732 bits (343), Expect = 1.143e-31
Identity = 68/149 (45.64%), Postives = 103/149 (69.13%), Query Frame = 3
Query:  270 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701
            +EE  RL++IR+T+MQ+  DRGY V   E++ + E+F A+ G+       +R DL +  A  +D +DQ++VFFP+E KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ K+ LE F + ELL+NI EH LVPE  V+T
Sbjct:    4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMT 152          
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos taurus GN=POLR2E PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 68/149 (45.64%), Postives = 102/149 (68.46%), Query Frame = 3
Query:  270 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701
            +EE  RL++IR+T+MQ+  DRGY V    ++ + E+F A+FG        +R DL +  A  +D +DQ++VFFP+E KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ K+ LE F + ELL+NI EH LVPE  V+T
Sbjct:    4 EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMT 152          
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=H27M09.2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.677e-30
Identity = 68/153 (44.44%), Postives = 104/153 (67.97%), Query Frame = 3
Query:  264 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701
            ++D+E++  RL+RIR+TV+QM+ DRGY V   E++   E F  ++G+        R DL I  A  +D +DQ++VFFP++ K+G+KT+K    +M+ +N+ RAI+VVQ  +TP A+  I +++ K+ LE F EAEL+VNI EH LVPE  V+T
Sbjct:    1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMT 153          
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 69/145 (47.59%), Postives = 91/145 (62.76%), Query Frame = 3
Query:  273 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS--AKFHLEVFQEAELLVNIKEHVLVPEASVLT 701
            E+I RL +IR+TV+QML DR Y +  +E    +E F++       RE+L +    ++D +D IYVFFPD  KVGV  +K Y + MK     RAI+VVQQN+TPFA+  + E S   K  LE F EAELLVNI  H LVP+  +LT
Sbjct:    2 EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPTDSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHILLT 139          
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Schizosaccharomyces pombe GN=rpb5 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 53/152 (34.87%), Postives = 86/152 (56.58%), Query Frame = 3
Query:  258 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAK---FGENMKREDLVINKALRNDSSD-QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701
            M+  ++ I R+FR  +T  Q++ DRGY V   E++++ +QF A     G N+ R  L       NDS+   IY+ F  E  VG+K M+T+ + +   N    IL+   ++TP A   I  ++ +F +E FQE++L+VNI  H LVP+  +L+
Sbjct:    1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLS 152          
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Saccharomyces cerevisiae GN=RPB5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.508e-18
Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  267 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPE 686
            ++  I RL+R  RTV +M++DRGYF+   E+ +  E F AK+ ++M R    +     N + + I         +V F DE  VGVKTMKT+   ++ +N    I V Q N+TP A   +  I     +E F EA L+VNI  H LVP+
Sbjct:    5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPA-TIETFNEAALVVNITHHELVPK 152          
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_CANGA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Candida glabrata GN=RPB5 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 53/149 (35.57%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  267 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ---------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPE 686
            +D  I RL+R  RTV +M+RDRGYF+   E++++ E F  K+ ++M R    +     N + +          ++V F DE  VGVKTMKT+   ++ +     I + Q N+TP A   +  I     +E F EA L+VNI  H LVP+
Sbjct:    5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANPTEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLVPSIPPA-TIETFHEAALVVNITHHDLVPK 152          
The following BLAST results are available for this feature:
BLAST of CX294953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RPAB1_RAT1.350e-3246.31DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_PONAB1.350e-3246.31DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_MOUSE1.350e-3246.31DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_HUMAN1.143e-3145.64DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_BOVIN2.547e-3145.64DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_CAEEL3.677e-3044.44DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_DICDI1.308e-2747.59DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_SCHPO6.506e-1934.87DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_YEAST5.508e-1836.91DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_CANGA1.227e-1735.57DNA-directed RNA polymerases I, II, and III subuni... [more]

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Properties
Property NameValue
Genbank descriptionC05065A04SK DroRLeaf1 Citrus clementina cDNA clone C05065A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294953 ID=CX294953; Name=CX294953; organism=Citrus clementina; type=EST; length=704bp
CACGGTCTCGTGTAGCCGTTTGTTGCCGCTGCCAACGACCCGCTGCCAAC
GACCCGCTGCTGTCGCCGCCGCTGACCGTTTTCTTGAAACGGTACCGTAA
TACACATCTCTCGTACTCGCTTTCTCATAAAGTTATTGCCTTTAGGTTTT
TTAAGGCTGAAGCTGATTAGCTTTTATGCTCCTACTTCTCTTTTAGTACA
AGTGGGTATTAGTTTTACTCAACAGCTTCGTGTCATCTGAAATTTAAAGG
ATAAAACATGACTTTATCCGATGAAGAAATCAAAAGGCTATTCAGAATCC
GGAGGACGGTCATGCAGATGCTCAGAGATAGGGGTTATTTTGTTGGAGAC
TTTGAAATCAATATGAGCAAAGAACAGTTCATTGCTAAATTTGGTGAGAA
CATGAAAAGGGAGGACCTTGTTATCAATAAAGCATTACGAAATGATAGCT
CAGATCAGATCTATGTTTTCTTCCCTGATGAACAAAAAGTTGGGGTTAAG
ACAATGAAGACTTATACTAATCGTATGAAATCGGAAAATGTTTTCCGAGC
AATATTGGTGGTTCAACAAAATTTGACTCCCTTTGCTCGAACATGCATAC
AAGAGATATCTGCAAAATTCCACTTGGAGGTATTCCAGGAGGCAGAGCTT
TTGGTCAACATCAAAGAACACGTTCTGGTTCCTGAAGCATCAGTGCTTAC
AAAT
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