CX294953
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.350e-32 Identity = 69/149 (46.31%), Postives = 104/149 (69.80%), Query Frame = 3 Query: 270 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701 +EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPE V+T Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMT 152
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.350e-32 Identity = 69/149 (46.31%), Postives = 104/149 (69.80%), Query Frame = 3 Query: 270 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701 +EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPE V+T Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMT 152
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.350e-32 Identity = 69/149 (46.31%), Postives = 104/149 (69.80%), Query Frame = 3 Query: 270 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701 +EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPE V+T Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMT 152
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4) HSP 1 Score: 136.732 bits (343), Expect = 1.143e-31 Identity = 68/149 (45.64%), Postives = 103/149 (69.13%), Query Frame = 3 Query: 270 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701 +EE RL++IR+T+MQ+ DRGY V E++ + E+F A+ G+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPE V+T Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMT 152
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos taurus GN=POLR2E PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31 Identity = 68/149 (45.64%), Postives = 102/149 (68.46%), Query Frame = 3 Query: 270 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701 +EE RL++IR+T+MQ+ DRGY V ++ + E+F A+FG +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPE V+T Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMT 152
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=H27M09.2 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.677e-30 Identity = 68/153 (44.44%), Postives = 104/153 (67.97%), Query Frame = 3 Query: 264 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701 ++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F ++G+ R DL I A +D +DQ++VFFP++ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I +++ K+ LE F EAEL+VNI EH LVPE V+T Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMT 153
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27 Identity = 69/145 (47.59%), Postives = 91/145 (62.76%), Query Frame = 3 Query: 273 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS--AKFHLEVFQEAELLVNIKEHVLVPEASVLT 701 E+I RL +IR+TV+QML DR Y + +E +E F++ RE+L + ++D +D IYVFFPD KVGV +K Y + MK RAI+VVQQN+TPFA+ + E S K LE F EAELLVNI H LVP+ +LT Sbjct: 2 EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPTDSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHILLT 139
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Schizosaccharomyces pombe GN=rpb5 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19 Identity = 53/152 (34.87%), Postives = 86/152 (56.58%), Query Frame = 3 Query: 258 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAK---FGENMKREDLVINKALRNDSSD-QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEASVLT 701 M+ ++ I R+FR +T Q++ DRGY V E++++ +QF A G N+ R L NDS+ IY+ F E VG+K M+T+ + + N IL+ ++TP A I ++ +F +E FQE++L+VNI H LVP+ +L+ Sbjct: 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLS 152
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Saccharomyces cerevisiae GN=RPB5 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.508e-18 Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 3 Query: 267 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPE 686 ++ I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + + I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I +E F EA L+VNI H LVP+ Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPA-TIETFNEAALVVNITHHELVPK 152
BLAST of CX294953 vs. ExPASy Swiss-Prot
Match: RPAB1_CANGA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Candida glabrata GN=RPB5 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17 Identity = 53/149 (35.57%), Postives = 80/149 (53.69%), Query Frame = 3 Query: 267 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ---------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPE 686 +D I RL+R RTV +M+RDRGYF+ E++++ E F K+ ++M R + N + + ++V F DE VGVKTMKT+ ++ + I + Q N+TP A + I +E F EA L+VNI H LVP+ Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANPTEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLVPSIPPA-TIETFHEAALVVNITHHDLVPK 152 The following BLAST results are available for this feature:
BLAST of CX294953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294953 ID=CX294953; Name=CX294953; organism=Citrus clementina; type=EST; length=704bpback to top |