CX294958

Overview
NameCX294958
Unique NameCX294958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig601 contig Ccv1_Contig601:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294958 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 3 
Query:  249 GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFF 569
            GEHG    ++  ++++           FAGE+  +    +YSR+ NPTV     ++AALEG E A  TASGMSAI +++M LCSSG HV+ +R+++G T +L   +F
Sbjct:   34 GEHGE---ALFTTSSYVFRTAADAAARFAGEVPGN----VYSRYTNPTVRTFEERIAALEGAEQAVATASGMSAILALVMSLCSSGDHVLVSRSVFGSTISLFDKYF 133
The following BLAST results are available for this feature:
BLAST of CX294958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METZ_PSEAE3.358e-1440.19O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
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Properties
Property NameValue
Genbank descriptionC05065A09SK DroRLeaf1 Citrus clementina cDNA clone C05065A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294958 ID=CX294958; Name=CX294958; organism=Citrus clementina; type=EST; length=672bp
CAAGACCAATACATATTGATCATCAGCCTAGAATTAGATCCTAGAATATA
AACAATCGAAAGTAAAAAAAAAAAAAAAAAATTAAAGATCAAATGGCCGA
ATGCTTTGTGCTATCTAGCAAGAAAAGATCGGCGGGGACGGAGGAAACCG
ACGGCGATGATCTTTATAAGACGAAGAAATCGATGTTATCGACTGCAGCA
GCATGGGAGGACCCTGCTGCTGCATTAGCCAGTGCCAGGCATGAGTTTGG
TGAACACGGTGGCGTTAACATGTCAATCGAAGCCTCTGCCACCTTCACTG
TCATGGAGCCCGAGACCATGCGCCGCATGTTCGCCGGCGAGCTTGGCCCT
GACCGTGACTTCTTCATCTACAGCCGTCACTTTAACCCCACTGTCTTAAA
TCTCAGCCGTCAGATGGCTGCTCTCGAAGGAACCGAGGCCGCTTATTGCA
CCGCCAGCGGTATGTCTGCAATTTCGTCCGTATTGATGCAACTATGCAGC
AGTGGAGGACACGTGGTGGCAGCGCGGACACTCTATGGTGGGACTCATGC
TTTGCTGACCCACTTTTTCCCGAGGGCTTGCACATAACGACGACGTTCGT
CGACATCAGCGATCACGAGATGGTGATAGTGCATTGTTCAGGAAGGACAA
GGGCTGTCTTTGAGTCATCTCT
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