CX296274

Overview
NameCX296274
Unique NameCX296274
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig64 contig Ccv1_Contig64:28..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296274 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.130e-46
Identity = 95/128 (74.22%), Postives = 103/128 (80.47%), Query Frame = 1
Query:   73 KPAPFTVGKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 447
            KPA FTV K+AARGLPSL  A+ SFKIVA G  KIKTDKP+GING MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of CX296274 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.143e-45
Identity = 91/128 (71.09%), Postives = 103/128 (80.47%), Query Frame = 1
Query:   73 KPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 447
            KPAPF+V K+A +GLPSLA++S  F++ A G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT           V+NTSALAQ
Sbjct:    9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of CX296274 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.155e-44
Identity = 91/129 (70.54%), Postives = 102/129 (79.07%), Query Frame = 1
Query:   73 KPAPFTVGKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 447
            KPA FTV K +ARGLPSL +   +SF+IVA G  KIKTDKP+G+NG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of CX296274 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.112e-43
Identity = 87/124 (70.16%), Postives = 100/124 (80.65%), Query Frame = 1
Query:   85 FTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 447
            FT+ K++ +GLPSLA++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of CX296274 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.017e-42
Identity = 86/124 (69.35%), Postives = 98/124 (79.03%), Query Frame = 1
Query:   85 FTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 447
            FT+ K + +GLPSL ++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of CX296274 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.561e-39
Identity = 84/129 (65.12%), Postives = 96/129 (74.42%), Query Frame = 1
Query:   73 KPAPFTVG-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 447
            KP+ F V  KSA +GLPSL+++S  F + A G  KIK DKP GI GGM LR+G+D+SGRK  GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT           VYNTSALAQ
Sbjct:   12 KPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of CX296274 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.602e-31
Identity = 69/117 (58.97%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   97 KSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALA 444
            +S   G+   A+ S  IVAK  K ++T +PYG  GG+  +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY   +WSPSGDVY GG TGL +WAVT           VY+TSALA
Sbjct:   21 RSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of CX296274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_ARATH5.130e-4674.22Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC1.143e-4571.09Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM2.155e-4470.54Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU3.112e-4370.16Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC2.017e-4269.35Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL3.561e-3965.12Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU1.602e-3158.97Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC05138C01SK FerrChloL1 Citrus clementina cDNA clone C05138C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296274 ID=CX296274; Name=CX296274; organism=Citrus clementina; type=EST; length=633bp
ACGAGGCAAAACCAACAGGAGAGCACAGCAAAGCAAATGGCAGCCTCAGT
GATGGCTTCTTCGTTGAGCCTGAAACCAGCTCCTTTCACTGTGGGGAAAT
CAGCAGCGAGAGGCCTTCCCTCTCTTGCTAAAACTTCATTCAAAATTGTG
GCTAAAGGCGGCAAGATCAAAACCGACAAACCCTATGGAATAAATGGTGG
TATGGATTTGAGGGAAGGTCTTGATGCATCCGGCAGGAAGGCTAAGGGGA
AAGGTGTTTACCAATTTGTTGACAAATACGGTGCCAATGTTGATGGATAC
AGTCCTATCTACAACGAGAATGACTGGTCTCCCAGTGGTGATGTCTATAC
TGGTGGTGCAACTGGCTTGGCAATCTGGGCTGTTACTCTTGCCGGTCTTC
TTGCAGGAGGAGCACTTCTCGTCTACAACACAAGTGCTTTGGCACAGTAG
ATGAATTTCAATCAATGTTACATTATTATCTCTATTTTTTATAACTTGTC
AATGTTGCTGTTAAATGTACCTTCCACAGCTACTTCGTGTATCTATTTTG
TGTAATGTTTTGGGTGGATTTAAATTGAGACATATAGCCATCTAAACCTC
GTGCCGAATTCGGCACGAGAGGGGGGGCCCGGT
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