CX297490

Overview
NameCX297490
Unique NameCX297490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX297490 vs. ExPASy Swiss-Prot
Match: CA156_BOVIN (UPF0558 protein C1orf156 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 41/115 (35.65%), Postives = 58/115 (50.43%), Query Frame = 2 
Query:    5 EFGTRGWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSV---HFYAGDWEE 340
            E G + WE + DL+  L       ++ F GK+VL+L CG GL GI A   GA  +HFQD ++  I   T+PNV+AN     E             R T+A  +    F++G+W E
Sbjct:  163 EGGLKIWECTFDLLAYLTK----AKVKFAGKKVLDLGCGSGLLGIMALKGGAKEIHFQDYNSVVIDEVTLPNVVANSTLEDEENDVNEPDVKRLRRSTVAQELCKCRFFSGEWSE 273
The following BLAST results are available for this feature:
BLAST of CX297490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CA156_BOVIN7.531e-1135.65UPF0558 protein C1orf156 homolog OS=Bos taurus PE=... [more]
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Properties
Property NameValue
Genbank descriptionC06002A09SK RindPdig24 Citrus clementina cDNA clone C06002A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297490 ID=CX297490; Name=CX297490; organism=Citrus clementina; type=EST; length=661bp
GCAGGAATTCGGCACGAGGGGTTGGGAAAGCTCTATTGATCTTGTTAATG
TTCTTAAGCATGAGATTCGTGATGGACAACTGAGCTTTAGAGGCAAAAGG
GTACTCGAGTTGAGCTGTGGCTATGGACTTCCTGGGATTTTTGCTTGCCT
GAAGGGTGCTGGTACTGTACACTTTCAAGATCTCAGTGCAGAAACAATAA
GATGCACAACTGTACCAAATGTCCTTGCCAATCTTGAGCAAGCTCGGGAG
AGGCAGAGCCGACAACCAGAGAGTTCCCTGACGCCATCAAGGCAAACTCT
GGCACCATCAGTGCACTTCTACGCTGGTGATTGGGAAGAACTACCCACAG
TTTTATCTGTTGTGAGGAACGATGTTTCTGAAGTCACAACAGGGATGAGC
CTGAGCTTCTCTGAGGAGGATTTCATGGATGGGTGTAGTAGCCAAGATGG
AAGCATCATCGGACAGGACTCCTCCTCAAGACGCTCAAGGAAGCTTTCTG
GAAGCCGGGCATGGGAGAGGGCTAGCGAGGCAGATCAGGGTGAAGGTGGT
TATGATGTTATTTTGTTGACAGAGATCCCATATTCAGTGACCTCACTGAA
GAAAATATATTTACTAATTAAAAAGTGTTTGAGGCCTCCATATGGAGTAG
TATACTTAGCA
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