CX297492

Overview
NameCX297492
Unique NameCX297492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig724 contig Ccv1_Contig724:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297492 vs. ExPASy Swiss-Prot
Match: YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 47/122 (38.52%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  318 CLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARE 683
            C+ RYL A  W+V  AKK + +TL WR  +    +  +EI  E  TGK    G+ D+ GR  L L P  QNT +   Q+RHLV+ +E AI  +P G E +A LI+F   S  ++  +   +E
Sbjct:  637 CILRYLRATKWHVSNAKKRIVDTLVWRRHFGVNNMDPDEIQEENATGKQVLLGY-DKDGRPCLYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQGKE 757          
BLAST of CX297492 vs. ExPASy Swiss-Prot
Match: PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae GN=PDR16 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 44/137 (32.12%), Postives = 68/137 (49.64%), Query Frame = 3
Query:  279 PLYGRSLQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTY--------RPEEIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVP 665
            PL      + +  C  RYL A  W +      +  TL WR  +          ++I  + +AVE E+GK    G+ +   R +L L+PG QNT +   Q++HLV+++E  I  +P GQ+ +A LIDF  +     VP
Sbjct:   76 PLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGY-ENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVP 211          
BLAST of CX297492 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 41/133 (30.83%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  255 KELKAAIGPLYGRS-LQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIR-WNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQM--RHLVYLIENAI--LNLPEGQEQMAWLIDF 635
            KE+K+    L   + + +C+D C  RYL ARN+ V K++KML +TL+WR  +RP++I+   +I   G  G ++     D+ GR ++   P      ++ +++  ++LVY +E     ++ P+G EQ  +++D+
Sbjct:   53 KEIKSNFSDLTDPTDIAFCTDMCFLRYLRARNYIVSKSEKMLRDTLEWRKKFRPQDIQLGGDIREIGSAGCVY-VNKRDKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQGFSRMDEPKGIEQFCFIVDY 184          
BLAST of CX297492 vs. ExPASy Swiss-Prot
Match: PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae GN=PDR17 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 3
Query:  303 YCSDACLKRYLEARNWNVDKAKKMLEETLKWRS----TYRPEE---IRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGW 644
            + S  C  RYL A  WN   A K L +TL WR     T+  E+   +  +++AVE ETGK    GF D   R +  ++ G QNT S   Q++ LVY++E A    P+G E++  L+DF  +
Sbjct:   89 WLSRECFLRYLRANKWNTANAIKGLTKTLVWRREIGLTHGKEDKDPLTADKVAVENETGKQVILGF-DNAKRPLYYMKNGRQNTESSFRQVQELVYMMETATTVAPQGVEKITVLVDFKSY 208          
The following BLAST results are available for this feature:
BLAST of CX297492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YJX4_SCHPO5.370e-1538.52CRAL-TRIO domain-containing protein C23B6.04c OS=S... [more]
PDR16_YEAST8.573e-1332.12Phosphatidylinositol transfer protein PDR16 OS=Sac... [more]
RSC5_DICDI1.120e-1230.83Random slug protein 5 OS=Dictyostelium discoideum ... [more]
PDR17_YEAST2.494e-1237.19Phosphatidylinositol transfer protein PDR17 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionC06002A11SK RindPdig24 Citrus clementina cDNA clone C06002A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297492 ID=CX297492; Name=CX297492; organism=Citrus clementina; type=EST; length=683bp
ACAAATATCTATCAGAGTAATTTCTTTTTCTTTTTCCTTTTACTTCCACT
CATTTTTTTCCTTTTTAGTAAATTTTGTATTCGTTTCGTCAACTCCATCT
TCTTCAAAATCAGATTCATAGACAAAGCATCACCACGGTGTTTCTATCTC
CTTCTCCAGGTTGACTCGATTGCTAAATTGTGGGATCAGTCGCCATGTTT
CGCAAGAAGAATAACACTCAGGAGAGTGAGGAGCACCATCATGAGTCAAA
GGTCAAGGAGCTTAAGGCTGCAATTGGACCACTTTATGGACGTAGTTTGC
AGTACTGCTCTGATGCATGCTTGAAGAGATATCTGGAGGCTCGAAACTGG
AATGTGGACAAAGCAAAGAAAATGTTGGAAGAGACACTCAAATGGAGGTC
AACCTACAGGCCGGAGGAAATCCGTTGGAATGAAATTGCAGTTGAAGGTG
AGACCGGAAAGTTATTTAGAGCTGGTTTTCATGACCGACATGGCAGGACT
GTTCTCATATTGAGACCCGGAATGCAGAACACTGCATCAATAGACAATCA
GATGAGACACCTAGTCTATCTCATAGAGAATGCTATCCTAAACCTTCCAG
AGGGTCAGGAACAAATGGCATGGTTAATAGACTTCACTGGGTGGTCATTG
AGCACCAGCGTCCCCATCAGGTCTGCCCGAGAA
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