CX297494

Overview
NameCX297494
Unique NameCX297494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7404 contig Ccv1_Contig7404:1043..1662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297494 vs. ExPASy Swiss-Prot
Match: DGDG1_LOTJA (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 1.880e-106
Identity = 180/204 (88.24%), Postives = 194/204 (95.10%), Query Frame = 1
Query:    7 MTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYP-NVTFCSPEEQENYMRNWLEERVGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDRE 615
            MTGTAVNPLFRAAYL+++E+Q VTLLVPWLCKSDQELVYP N+TF SPEEQE Y+RNWLEER+GFKADFKISFYPGKFS+ RRSIIPAGDT+QFIPSKDADIAILEEPEHLNWYHHG RWTDKFNHVVG+VHTNYLEYIKREKNGALQAF VKHINNWV RAYCDKVLRLSAATQDLPKSV+CNVHGVNPKFL+IGE +A +RE
Sbjct:  327 MTGTAVNPLFRAAYLSQSEKQKVTLLVPWLCKSDQELVYPSNLTFTSPEEQEGYIRNWLEERIGFKADFKISFYPGKFSQARRSIIPAGDTAQFIPSKDADIAILEEPEHLNWYHHGTRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFLVKHINNWVARAYCDKVLRLSAATQDLPKSVVCNVHGVNPKFLKIGESIAAERE 530          
BLAST of CX297494 vs. ExPASy Swiss-Prot
Match: DGDG1_SOYBN (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Glycine max GN=DGD1 PE=2 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 4.188e-106
Identity = 181/204 (88.73%), Postives = 195/204 (95.59%), Query Frame = 1
Query:    7 MTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYP-NVTFCSPEEQENYMRNWLEERVGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDRE 615
            MTGTAVNPLFRAAYL+++ +Q VTLLVPWLCKSDQELVYP N+TF SPEEQE Y+R+WLEER+GFKADFKISFYPGKFS+ RRSIIPAGDTSQFIPS+DADIAILEEPEHLNWYHHGKRWTDKFNHVVG+VHTNYLEYIKREKNGALQAF VKHINNWVTRAYC KVLRLSAATQDLPKSVICNVHGVNPKFL+IGEK+A +RE
Sbjct:  324 MTGTAVNPLFRAAYLSQSAKQKVTLLVPWLCKSDQELVYPSNLTFTSPEEQEAYIRSWLEERIGFKADFKISFYPGKFSEARRSIIPAGDTSQFIPSRDADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFLVKHINNWVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKIAAERE 527          
BLAST of CX297494 vs. ExPASy Swiss-Prot
Match: DGDG1_ARATH (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DGD1 PE=1 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 9.331e-106
Identity = 179/205 (87.32%), Postives = 194/205 (94.63%), Query Frame = 1
Query:    7 MTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEERVGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDREQ 618
            MTGTAVNPLFRAAYLAK  +Q+VTL+VPWLC+SDQELVYPN +TF SPEEQE+Y+R WLEER+GFKADFKISFYPGKFSKERRSI PAGDTSQFI SKDADIAILEEPEHLNWY+HGKRWTDKFNHVVG+VHTNYLEYIKREKNGALQAFFV H+NNWVTRAYCDKVLRLSAATQDLPKSV+CNVHGVNPKFL IGEK+A +R +
Sbjct:  357 MTGTAVNPLFRAAYLAKAAKQSVTLVVPWLCESDQELVYPNNLTFSSPEEQESYIRKWLEERIGFKADFKISFYPGKFSKERRSIFPAGDTSQFISSKDADIAILEEPEHLNWYYHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFFVNHVNNWVTRAYCDKVLRLSAATQDLPKSVVCNVHGVNPKFLMIGEKIAEERSR 561          
BLAST of CX297494 vs. ExPASy Swiss-Prot
Match: DGDG2_SOYBN (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Glycine max GN=DGD2 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.023e-80
Identity = 134/198 (67.68%), Postives = 162/198 (81.82%), Query Frame = 1
Query:    7 MTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEERVGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEK 597
            +TGTAVNPLFRAAYLAK+ +++VTL++PWL   DQ LVYPN +TF SP E E Y+  WLEERVGF + F I FYPGKFS+++RSI+  GD S+ IP K ADIA+LEEPEHL WYHHGKRW  KF  V+G++HTNYLEY+KREKNG +QAF +K++NNWV   YC KV+RLSAATQD   S+ICNVHGVNPKFL+IG+K
Sbjct:   18 LTGTAVNPLFRAAYLAKSGERDVTLVIPWLSLKDQRLVYPNNITFASPSEHEKYICQWLEERVGFTSGFSIQFYPGKFSRDKRSILAVGDISEIIPDKVADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIIHTNYLEYVKREKNGVMQAFLLKYLNNWVVSIYCHKVIRLSAATQDYTGSIICNVHGVNPKFLEIGKK 215          
BLAST of CX297494 vs. ExPASy Swiss-Prot
Match: DGDG2_LOTJA (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 3.948e-80
Identity = 132/198 (66.67%), Postives = 163/198 (82.32%), Query Frame = 1
Query:    7 MTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEERVGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEK 597
            +TGTAVNPLFRAAYL+K  +++VTL++PWL   DQ LVYPN +TF SP E E Y+R WLEERVGF + F I FYPGKFS+++RSI+  GD S+ IP K+ADIA+LEEPEHL W+HHGKRW  KF  V+G++HTNYLEY+KREKNG +QAF +K++NNWV   YC KV+RLSAATQD   S++CNVHGVNPKFL+IG+K
Sbjct:   18 LTGTAVNPLFRAAYLSKDGERDVTLVIPWLSLKDQALVYPNNITFASPSEHEKYIRQWLEERVGFTSGFSIKFYPGKFSRDKRSILAVGDISEVIPDKEADIAVLEEPEHLTWFHHGKRWKTKFRLVIGIIHTNYLEYVKREKNGQMQAFLLKYLNNWVVGIYCHKVIRLSAATQDYSGSIVCNVHGVNPKFLEIGKK 215          
BLAST of CX297494 vs. ExPASy Swiss-Prot
Match: DGDG2_ARATH (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DGD2 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 6.302e-78
Identity = 128/196 (65.31%), Postives = 163/196 (83.16%), Query Frame = 1
Query:    7 MTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEERVGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIG 591
            +TGTAVNPLFRAAYLA   ++ VTL++PWL    Q+LVYPN +TF SP EQE Y+R WLEERV F+  F+I FYPGKF+ ++RSI+P GD S  IP ++ADIA+LEEPEHL W+HHG++W  KFN+V+G+VHTNYLEY+KREK G ++AFF+K++N+WV   YC KV+RLSAATQ+ PKS++CNVHGVNPKFL+IG
Sbjct:   20 LTGTAVNPLFRAAYLANDGERRVTLVIPWLTLKHQKLVYPNSITFSSPSEQEAYVRQWLEERVSFRLAFEIRFYPGKFAIDKRSILPVGDISDAIPDEEADIAVLEEPEHLTWFHHGQKWKTKFNYVIGIVHTNYLEYVKREKQGRVKAFFLKYLNSWVVGIYCHKVIRLSAATQEYPKSIVCNVHGVNPKFLEIG 215          
The following BLAST results are available for this feature:
BLAST of CX297494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DGDG1_LOTJA1.880e-10688.24Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_SOYBN4.188e-10688.73Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_ARATH9.331e-10687.32Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG2_SOYBN3.023e-8067.68Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_LOTJA3.948e-8066.67Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_ARATH6.302e-7865.31Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC06002B01SK RindPdig24 Citrus clementina cDNA clone C06002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297494 ID=CX297494; Name=CX297494; organism=Citrus clementina; type=EST; length=620bp
CGAGGGATGACTGGAACTGCTGTGAATCCACTTTTTCGAGCAGCTTATTT
AGCAAAGACTGAACAACAAAATGTTACACTTTTGGTTCCCTGGCTTTGTA
AGTCGGACCAAGAATTAGTTTATCCTAATGTCACTTTTTGTTCGCCAGAA
GAGCAGGAAAACTACATGCGTAATTGGCTCGAGGAAAGGGTTGGCTTTAA
GGCAGATTTTAAAATCTCCTTTTATCCTGGAAAGTTCTCAAAAGAAAGAC
GTAGTATAATACCTGCTGGAGATACTTCTCAGTTTATTCCGTCAAAAGAT
GCTGATATTGCAATCCTAGAAGAACCAGAGCACCTGAATTGGTACCATCA
TGGTAAGCGCTGGACTGATAAATTCAACCATGTTGTTGGTGTTGTCCACA
CAAATTACTTGGAGTATATCAAGAGGGAAAAGAATGGGGCTCTGCAAGCT
TTCTTTGTGAAACACATTAACAATTGGGTCACTAGAGCATACTGTGACAA
GGTTCTTCGTCTTTCAGCTGCCACTCAGGATTTACCAAAATCTGTGATTT
GCAATGTCCATGGTGTAAATCCAAAGTTTTTGCAAATTGGTGAAAAGGTT
GCTACAGATAGGGAACAAGG
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