CX297498

Overview
NameCX297498
Unique NameCX297498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 2.322e-72
Identity = 135/209 (64.59%), Postives = 159/209 (76.08%), Query Frame = 3
Query:   90 LIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQP---VPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK--VLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            L +FT+ EL+  T NFR D VL       V+KG+I E      +P   V +AVK  + D  +QGH+EWLAEV +LG  SHPNLVKLIGYC EDEHR+L+YEFM RGS+EN+LF +     PL W++R+K+A GAAKGLAFLH AE  VIYRDFKTSNILLD++YNA LSDFGLAKDGP GDKSHVSTRIMGTYGYAAPEY+ TGHLT +
Sbjct:   54 LKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDG-WQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFLHNAETSVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPTGDKSHVSTRIMGTYGYAAPEYLATGHLTTK 261          

HSP 2 Score: 28.8758 bits (63), Expect = 2.322e-72
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G   ++SDVYS+GVVLLE+
Sbjct:  256 GHLTTKSDVYSYGVVLLEV 274          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 7.998e-70
Identity = 130/209 (62.20%), Postives = 159/209 (76.08%), Query Frame = 3
Query:   90 LIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQP---VPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLL--PLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            L +F++ EL+  T NFR D VL      CV+KG+I E      +P   + +AVK  + D  +QGH+EWLAEV +LG  SH +LVKLIGYC EDEHR+L+YEFM RGS+EN+LF + L   PL W +R+K+A GAAKGLAFLH +E  VIYRDFKTSNILLD++YNA LSDFGLAKDGP GDKSHVSTR+MGT+GYAAPEY+ TGHLT +
Sbjct:   53 LKSFSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDG-WQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGLYFQPLSWKLRLKVALGAAKGLAFLHSSETRVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPIGDKSHVSTRVMGTHGYAAPEYLATGHLTTK 260          

HSP 2 Score: 29.6462 bits (65), Expect = 7.998e-70
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G   ++SDVYSFGVVLLE+
Sbjct:  255 GHLTTKSDVYSFGVVLLEL 273          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 5.594e-68
Identity = 129/232 (55.60%), Postives = 166/232 (71.55%), Query Frame = 3
Query:   15 EKEYGKLPSNPEEVEDLRRDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQP---VPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            +  +G LP+   E E L   S+ N L AFT++EL+  T NFRQD +L      CV+KG+I +      +P   + VAVK    +  +QGH+EWL EV +LG LSHPNLV L+GYC E E+R+L+YEFM +GS+EN+LF +   PL W+IRMK+A GAAKGL FLHEA+  VIYRDFK +NILLD D+NA LSDFGLAK GP GD +HVST+++GT+GYAAPEY+ TG LT +
Sbjct:   50 DSSFGPLPTLRTEGEIL---SSPN-LKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEG-FQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAVGAAKGLTFLHEAKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDNTHVSTKVIGTHGYAAPEYVATGRLTAK 276          

HSP 2 Score: 29.6462 bits (65), Expect = 5.594e-68
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G   ++SDVYSFGVVLLE+
Sbjct:  271 GRLTAKSDVYSFGVVLLEL 289          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 3.915e-66
Identity = 121/204 (59.31%), Postives = 150/204 (73.53%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQP---VPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLL--PLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            F+  EL+  T NFR D V+      CV+KG+I E      +P   + +AVK       +QGHREWLAE+ +LG L HPNLVKLIGYC E+EHR+L+YEFM RGS+EN+LF +     PL W+ R+++A GAA+GLAFLH A+  VIYRDFK SNILLD++YNA LSDFGLA+DGP GD SHVSTR+MGT GYAAPEY+ TGHL+
Sbjct:   56 FSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVK-RLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLFRRGTFYQPLSWNTRVRMALGAARGLAFLHNAQPQVIYRDFKASNILLDSNYNAKLSDFGLARDGPMGDNSHVSTRVMGTQGYAAPEYLATGHLS 258          

HSP 2 Score: 28.8758 bits (63), Expect = 3.915e-66
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G  + +SDVYSFGVVLLE+
Sbjct:  255 GHLSVKSDVYSFGVVLLEL 273          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.131e-65
Identity = 120/207 (57.97%), Postives = 153/207 (73.91%), Query Frame = 3
Query:   90 LIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQP---VPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            L AFT++EL+  T NFR D +L       V+KG+I        +P   + VAVK    +  YQGH+EWL EV +LG LSHPNLVKL+GYC E E+R+L+YEFM +GS+EN+LF +   PL W+IRMK+A GAAKGL FLH+A+  VIYRDFK +NILLD ++N+ LSDFGLAK GP GDK+HVST++MGT+GYAAPEY+ TG LT +
Sbjct:   68 LKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEG-YQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAIGAAKGLTFLHDAKSQVIYRDFKAANILLDAEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYVATGRLTAK 273          

HSP 2 Score: 29.6462 bits (65), Expect = 1.131e-65
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G   ++SDVYSFGVVLLE+
Sbjct:  268 GRLTAKSDVYSFGVVLLEL 286          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.951e-65
Identity = 122/213 (57.28%), Postives = 156/213 (73.24%), Query Frame = 3
Query:   78 AANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQP---VPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK--VLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            ++ P+ +FT++EL++ T NFR D V+      CV+KG++ E      +P   + +AVK  + +  +QGHREWL E+ +LG LSHPNLVKLIGYC EDEHR+L+YEFM +GS+EN+LF +     PLPW +R+ +A  AAKGLAFLH     VIYRD K SNILLD DYNA LSDFGLA+DGP GD S+VSTR+MGTYGYAAPEY+ +GHL  R
Sbjct:   48 SSTPVKSFTFNELKLATRNFRPDSVIGEGGFGCVFKGWLDESTLTPTKPGTGLVIAVKKLNQEG-FQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEHRLLVYEFMQKGSLENHLFRRGAYFKPLPWFLRVNVALDAAKGLAFLHSDPVKVIYRDIKASNILLDADYNAKLSDFGLARDGPMGDLSYVSTRVMGTYGYAAPEYMSSGHLNAR 259          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.884e-62
Identity = 117/208 (56.25%), Postives = 153/208 (73.56%), Query Frame = 3
Query:   96 AFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDL---REGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFS---KVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            +F+++EL++ T NFR D V+      CV++G++ E      +    + +AVK  + D  +QGHREWL E+ +LG LSHPNLVKLIGYC EDE R+L+YEFM +GS+EN+LF+   K   PL W +R+K+A  AAKGLAFLH     VIYRD K SNILLD+D+NA LSDFGLA+DGP G++S+VSTR+MGT+GYAAPEY+ TGHL  R
Sbjct:   48 SFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDG-FQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHSDPVKVIYRDIKASNILLDSDFNAKLSDFGLARDGPMGEQSYVSTRVMGTFGYAAPEYVSTGHLNAR 254          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 4.902e-54
Identity = 110/205 (53.66%), Postives = 144/205 (70.24%), Query Frame = 3
Query:   90 LIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDL----REGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHL 692
            L  + + +L+  T NF+ D +L       VY+G++        R G   + VA+K  + + S QG  EW +EV FLG LSH NLVKL+GYC ED+  +L+YEFM +GS+E++LF +   P PW +R+KI  GAA+GLAFLH  ++ VIYRDFK SNILLD++Y+A LSDFGLAK GP  +KSHV+TRIMGTYGYAAPEY+ TGHL
Sbjct:   71 LKVYNFLDLKTATKNFKPDSMLGQGGFGKVYRGWVDATTLAPSRVGSGMI-VAIKRLNSE-SVQGFAEWRSEVNFLGMLSHRNLVKLLGYCREDKELLLVYEFMPKGSLESHLFRRND-PFPWDLRIKIVIGAARGLAFLHSLQREVIYRDFKASNILLDSNYDAKLSDFGLAKLGPADEKSHVTTRIMGTYGYAAPEYMATGHL 272          

HSP 2 Score: 26.1794 bits (56), Expect = 4.902e-54
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDV++FGVVLLEI
Sbjct:  275 KSDVFAFGVVLLEI 288          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.828e-51
Identity = 107/224 (47.77%), Postives = 148/224 (66.07%), Query Frame = 3
Query:   33 LPSNPEEVEDLRRDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEH----RVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHL 692
            LPS P  ++DL  +   N L  F+Y+EL   T  F +  V+       VYKG I  +      P+ VA+K  +     QGH++WLAEV FLG ++HPN+VKLIGYC ED      R+L+YE+M+  S+E++LF +    LPW  R++I  GAA+GL +LH+ +  VIYRDFK+SN+LLD  +   LSDFGLA++GP+GD +HV+T  +GT+GYAAPEY+ TGHL
Sbjct:   54 LPS-PRSIKDLYTEREQN-LRVFSYEELSKATYVFSRKLVIGEGGFGIVYKGKILSNGDSSDPPLVVAIKKLNRQG-LQGHKQWLAEVQFLGVVNHPNVVKLIGYCSEDGETGIERLLVYEYMSNRSLEDHLFPRRSHTLPWKKRLEIMLGAAEGLTYLHDLK--VIYRDFKSSNVLLDDQFCPKLSDFGLAREGPDGDNTHVTTARVGTHGYAAPEYVQTGHL 272          

HSP 2 Score: 27.335 bits (59), Expect = 4.828e-51
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G    +SDVYSFGVVL EI
Sbjct:  270 GHLRLKSDVYSFGVVLYEI 288          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.573e-50
Identity = 114/205 (55.61%), Postives = 134/205 (65.37%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLP-----LPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            F + EL   T NF  D  L       VYKG +    +       VAVK  D  N  QG+RE+L EV+ L  L HPNLV LIGYC + + R+L+YEFM  GS+E++L     LP     L W++RMKIA GAAKGL FLH+ A  PVIYRDFK+SNILLD  ++  LSDFGLAK GP GDKSHVSTR+MGTYGY APEY MTG LT
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQV------VAVKQLDR-NGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHD---LPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLT 268          
The following BLAST results are available for this feature:
BLAST of CX297498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
APK1B_ARATH2.322e-7264.59Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
APK1A_ARATH7.998e-7062.20Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
APK2A_ARATH5.594e-6855.60Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
NAK_ARATH3.915e-6659.31Probable serine/threonine-protein kinase NAK OS=Ar... [more]
APK2B_ARATH1.131e-6557.97Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
BIK1_ARATH2.951e-6557.28Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
Y3545_ARATH8.884e-6256.25Probable receptor-like protein kinase At3g55450 OS... [more]
CX32_ARATH4.902e-5453.66Probable serine/threonine-protein kinase Cx32, chl... [more]
Y5707_ARATH4.828e-5147.77Probable receptor-like protein kinase At5g47070 OS... [more]
PBS1_ARATH4.573e-5055.61Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC06002B05SK RindPdig24 Citrus clementina cDNA clone C06002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297498 ID=CX297498; Name=CX297498; organism=Citrus clementina; type=EST; length=745bp
GAATTCGGCACGAGGAAAAGGAATACGGTAAGTTACCATCAAATCCGGAA
GAAGTAGAGGACCTGCGTCGTGATTCGGCTGCAAATCCATTGATTGCATT
CACGTACGATGAACTGAGAATCATCACTGCAAATTTCAGGCAAGATCGTG
TGTTGGGTGGAGGCGGATTTGGATGTGTTTACAAAGGGTTCATTTCTGAG
GACTTAAGGGAAGGGCTTCAGCCTGTTCCAGTGGCTGTTAAGGTTCATGA
TGGTGATAACAGTTATCAAGGCCACCGGGAATGGCTGGCAGAAGTCATAT
TTTTGGGACACCTTTCTCATCCGAATTTGGTTAAGTTGATCGGTTACTGC
TGTGAAGATGAACACCGGGTACTAATATATGAGTTCATGGCTCGGGGTAG
TGTCGAAAACAATCTTTTCTCAAAAGTACTGCTTCCTCTTCCATGGTCTA
TCAGAATGAAGATTGCATTTGGTGCTGCAAAAGGACTGGCCTTCCTTCAT
GAAGCAGAGAAACCTGTCATCTATCGCGACTTTAAGACATCTAATATTCT
CTTAGATACGGACTACAATGCANAGCTCTCGGACTTTGGCCTTGCCAAAG
ATGGACCAGAGGGGGACAAATCTCACGTTTCAACTCGCATAATGGGAACT
TATGGATATGCAGCCCCTGAGTACATAATGACGGGTCATCTAACTCCCAG
AGTGATGTGTACAGCTTTGGTGTCGTGCTTCTTGAGATCTGACAG
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