CX297499

Overview
NameCX297499
Unique NameCX297499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig769 contig Ccv1_Contig769:504..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: OPD22_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.626e-33
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 3
Query:   18 GIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            GIKQFCA+INPPQ+ ILA+GSAEKRV+PG GPDQY  +S+MSVTLSCDHRVIDGAIGAEWLKAFKGYIE PESMLL
Sbjct:  464 GIKQFCAVINPPQAAILAIGSAEKRVVPGTGPDQYNVASYMSVTLSCDHRVIDGAIGAEWLKAFKGYIETPESMLL 539          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: OPD23_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At1g54220 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 3
Query:   18 GIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            GIKQFCA++NPPQ+ ILAVGSAEKRV+PG GPDQ+ F+S+M VTLSCDHRV+DGAIGAEWLKAFKGYIENP+SMLL
Sbjct:  464 GIKQFCAVVNPPQAAILAVGSAEKRVVPGNGPDQFNFASYMPVTLSCDHRVVDGAIGAEWLKAFKGYIENPKSMLL 539          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_DICDI (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=pdhC PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.761e-22
Identity = 49/78 (62.82%), Postives = 63/78 (80.77%), Query Frame = 3
Query:   15 VGIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQ-YKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            +GIKQF A+INPPQ+ ILAVG+ E RV+    PD  Y+ ++ +SVTLSCDHRVIDGA+GAEWLK+FK Y+ENP  ++L
Sbjct:  558 LGIKQFAAVINPPQAAILAVGTTETRVVLSNKPDSPYETATILSVTLSCDHRVIDGAVGAEWLKSFKDYVENPIKLIL 635          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_RAT (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Rattus norvegicus GN=Dlat PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.024e-19
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   18 GIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            GIK F AIINPPQ+ ILA+G++E ++IP      +  +S MSVTLSCDHRV+DGA+GA+WL  FK Y+E P +MLL
Sbjct:  557 GIKNFSAIINPPQACILAIGASEDKLIPADNEKGFDVASVMSVTLSCDHRVVDGAVGAQWLAEFKKYLEKPVTMLL 632          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_MOUSE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlat PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   18 GIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            GIK F AIINPPQ+ ILA+G++E ++IP      +  +S MSVTLSCDHRV+DGA+GA+WL  FK Y+E P +MLL
Sbjct:  567 GIKNFSAIINPPQACILAIGASEDKLIPADNEKGFDVASVMSVTLSCDHRVVDGAVGAQWLAEFKKYLEKPITMLL 642          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_HUMAN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   18 GIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            GIK F AIINPPQ+ ILA+G++E +++P      +  +S MSVTLSCDHRV+DGA+GA+WL  F+ Y+E P +MLL
Sbjct:  572 GIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 647          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_RICBR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   18 GIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            GIK F AIINPPQS I+ VGS+ KR I  +  DQ   ++ M VTLS DHRV+DGA+GAE+L AFK +IE+P  MLL
Sbjct:  342 GIKNFNAIINPPQSCIMGVGSSSKRAI--VKNDQISIATIMDVTLSADHRVVDGAVGAEFLAAFKRFIESPALMLL 415          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_RICFE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia felis GN=pdhC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   18 GIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            GIK F AIINPPQS I+ VG++ KR I  +  DQ   ++ M VTLS DHRV+DGA+GAE+L AFK +IE+P  ML+
Sbjct:  339 GIKNFNAIINPPQSCIMGVGASAKRAI--VKNDQVTIATIMDVTLSADHRVVDGAVGAEFLAAFKKFIESPALMLI 412          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_RICCN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia conorii GN=pdhC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   18 GIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            GIK F AIINPPQS I+ VG++ KR I  +  DQ   ++ M VTLS DHRV+DGA+GAE+L AFK +IE+P  ML+
Sbjct:  339 GIKNFNAIINPPQSCIMGVGASAKRAI--VKNDQITIATIMDVTLSADHRVVDGAVGAEFLVAFKKFIESPVLMLI 412          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_CAEEL (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=F23B12.5 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:   21 IKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            +  F AIINPPQS ILA+G A  +++P    + YK    M VTLSCDHR +DGA+GA WL+ FK ++E P +MLL
Sbjct:  434 VSDFTAIINPPQSCILAIGGASDKLVPDEA-EGYKKIKTMKVTLSCDHRTVDGAVGAVWLRHFKEFLEKPHTMLL 507          
The following BLAST results are available for this feature:
BLAST of CX297499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
OPD22_ARATH3.626e-3385.53Dihydrolipoyllysine-residue acetyltransferase comp... [more]
OPD23_ARATH8.079e-3382.89Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_DICDI3.761e-2262.82Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RAT1.024e-1959.21Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_MOUSE1.338e-1959.21Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_HUMAN2.980e-1956.58Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICBR6.214e-1760.53Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICFE4.028e-1657.89Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICCN6.871e-1657.89Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_CAEEL6.871e-1653.33Dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Properties
Property NameValue
Genbank descriptionC06002B06SK RindPdig24 Citrus clementina cDNA clone C06002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297499 ID=CX297499; Name=CX297499; organism=Citrus clementina; type=EST; length=718bp
GAATTCGGCACGAGGTCGGCATCAAGCAATTCTGTGCCATTATCAATCCT
CCTCAATCTGGCATTCTTGCAGTTGGATCTGCTGAGAAAAGGGTTATCCC
TGGCTTGGGTCCAGATCAGTATAAATTTTCTTCCTTCATGTCAGTAACAT
TAAGTTGTGATCATCGCGTAATAGATGGTGCGATTGGTGCTGAATGGTTG
AAAGCATTCAAAGGATACATTGAGAATCCGGAGTCCATGTTGCTATAAGC
CAAACTTGTCTTTTTCTAAGTTGAGAAGCTCTTTCCTAGCTGTATCAGTT
TAGATGGGGGCTTCAGTTCAACCCCTTCCACCTGGGATCAGATTGGCATG
GTTGTGTCACTGAGCACATCTTGATTTTGTTTTTCAATTGGTAAACACTT
TTAAGCAAAAATTTTGGAATAAAAGCAGGGGATCGAGGCACGAAACCAAT
CCTTAAACTCATACTCATCCTTGATAGGGTGTTCAACAAGGTGTTCTGCT
ATCGCCGTTTCCTTAATGGATTTTTGGGTTACATACGTGATGAACATGAT
TTTAGTAGAGTGTAATCGCCTCTTTCATGCGGGTAATAATTTGATTTATA
TATAATTTTTGGATTTTCCAATTACCAGTGTTGTGTGAAACAACACTTAT
ATTAATTTGATAAACCTGTATTCTTGTTTTGGGGTATCCAATTGCCGTTG
TGTTACCATTTGGACATA
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