CX297503

Overview
NameCX297503
Unique NameCX297503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length444
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297503 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.166e-21
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 2
Query:    2 DKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFFNGCTEKYAGVLYGLGVEN 166
            +KLAELL+VERVGICHQAGSDSLLTSCTFRKL+ENFF G  EKY+GVLYGLGVEN
Sbjct:  216 NKLAELLDVERVGICHQAGSDSLLTSCTFRKLQENFFIGSMEKYSGVLYGLGVEN 270          
BLAST of CX297503 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.054e-21
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 2
Query:    2 DKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFFNGCTEKYAGVLYGLGVEN 166
            +KLAELLEVERVGICHQAGSDSLLTSCTFRKL+ENFF G   KY+GVLYGLGVEN
Sbjct:  215 NKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFVGPLHKYSGVLYGLGVEN 269          
BLAST of CX297503 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.623e-17
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 2
Query:    2 DKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFFNGCTEKYAGVLYGLGVENDKT 175
            ++LAEL+ VERVGICHQAGSDSLLT  +FRKL+E +F G TEKY GVLYGLGVE+  T
Sbjct:  215 NRLAELMGVERVGICHQAGSDSLLTLGSFRKLKERYFPGSTEKYTGVLYGLGVEDGTT 272          
BLAST of CX297503 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 2
Query:    2 DKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFFNGCTEKYAGVLYGL 154
            +K+AELL V+RVGI HQAGSDSLLT  TF K++E FF G   KY+G L+GL
Sbjct:  225 EKIAELLGVKRVGISHQAGSDSLLTLRTFIKMKEFFFTGSLLKYSGFLFGL 275          
The following BLAST results are available for this feature:
BLAST of CX297503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CAF1G_ARATH3.166e-2187.27Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1F_ARATH7.054e-2187.27Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1J_ARATH3.623e-1772.41Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1B_ARATH8.643e-1164.71Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC06002B10SK RindPdig24 Citrus clementina cDNA clone C06002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297503 ID=CX297503; Name=CX297503; organism=Citrus clementina; type=EST; length=444bp
GGACAAGCTTGCGGAGTTGTTGGAGGTAGAACGAGTTGGGATTTGTCATC
AAGCAGGTTCAGATAGTTTGCTCACTTCCTGCACATTTAGGAAGTTGAGG
GAAAACTTCTTCAACGGCTGCACAGAAAAGTATGCTGGTGTACTGTATGG
TCTCGGTGTCGAGAATGACAAGACTAATTAAAAACAAATAATTGGGAAAA
GGTTCATGGATATTTGTAGACTACTCAAGTGTGAAACTCTGTTTTCTCTT
TGTATACTTTGGCAAAAGATTGTTGTTTTAGTTGTGACTTCTGCTGTTTG
TTGCATTGTAACCGAAACCTTGACTGGTTTTGTAGTTTCAGTTTCTTGTA
AATTATTGCAGTTAGTGTTTCAATAATAATCATAATGATTCTCAACTTAN
AAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGGCCCGGT
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