CX299676

Overview
NameCX299676
Unique NameCX299676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299676_ssr1 microsatellite CX299676_ssr1:1..18. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX299676 vs. ExPASy Swiss-Prot
Match: Y1399_ARATH (Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = -3
Query:  294 SPNVQKKLVKETPPEGVSKIKGSAPCPFFSKPQSLHKILVEIAQIP 431
            SP+VQ+KLV+E  PEGV KIKGS  CPFFSKPQSLHKIL+EIAQIP
Sbjct:  303 SPDVQEKLVRENSPEGVFKIKGSDHCPFFSKPQSLHKILLEIAQIP 348          
The following BLAST results are available for this feature:
BLAST of CX299676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1399_ARATH2.671e-1480.43Probable esterase At1g33990 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC07001A04SK NTLeaf1 Citrus clementina cDNA clone C07001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299676 ID=CX299676; Name=CX299676; organism=Citrus clementina; type=EST; length=433bp
GAGAGAGAGAGAGAGAGACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTGGAGCCCTAAGTCATGCGTTCTAGCA
CTTGATTTAATTTACTACTGATTAATAAATAAGGGAATGATACATTGACT
TCCTTTATACCCATATTCTGAAAAAGAAACTACAGCATAAAAGCTGGCGT
CGATGTTCTACATACAACAAGTAATAACCCAACTTTTTTTGTTTTCTAAA
GTAATGATGAAAGAATTCTTACTCATTTTTTATATTGAAGGTATGGGATT
TGAGCAATTTCAACTAAAATTTTATGTAGTGACTGGGGCTTTGAAAAAAA
AGGGCAGGGGGCGCTTCCTTTGATCTTGGAGACTCCTTCTGGGGGGGTTT
CTTTAACAAGCTTTTTTTGAACATTTGGTGAAA
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