CX299687

Overview
NameCX299687
Unique NameCX299687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 6.712e-77
Identity = 135/159 (84.91%), Postives = 141/159 (88.68%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGG+S+HLFAV QGLLKVLAGIDTNFTVT KASDEDGDF ELYMFKW           +INLVGVVAG+SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW ILLA IFSLLWVR+DPFTTRVTGPD + CGINC
Sbjct:  923 RNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQTCGINC 1081          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 4.351e-76
Identity = 132/159 (83.02%), Postives = 143/159 (89.94%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVS+HLFAV QG+LKVLAGIDTNFTVT KASDEDGDF ELY+FKW           ++NLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW++LLA IFSLLWVR+DPFT+RVTGPD+ +CGINC
Sbjct:  907 RNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDILECGINC 1065          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 4.351e-76
Identity = 133/159 (83.65%), Postives = 142/159 (89.31%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGG+S+HLFAV QGLLKVLAGIDT+FTVT KASDE+GDF ELYMFKW           +INLVGVVAG+SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW ILLA IFSLLWVR+DPFTTRVTGPD ++CGINC
Sbjct:  915 RNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEEGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQKCGINC 1073          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 4.351e-76
Identity = 133/159 (83.65%), Postives = 142/159 (89.31%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGG+S+HLFAV QGLLKVLAGIDT+FTVT KASDE+GDF ELYMFKW           +INLVGVVAG+SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW ILLA IFSLLWVR+DPFTTRVTGPD ++CGINC
Sbjct:  915 RNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEEGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQKCGINC 1073          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 2.557e-68
Identity = 121/160 (75.62%), Postives = 137/160 (85.62%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKAS-DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVS+HLFAV+QGLLKVLAGIDTNFTVT KA+ DED +F ELY FKW           ++N++GVVAGVS AIN+G ++WGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVV+W++LLA IFSLLWVR+DPFT +  GPDV QCGINC
Sbjct:  896 RNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDEDDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTIKARGPDVRQCGINC 1055          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 2.557e-68
Identity = 121/160 (75.62%), Postives = 137/160 (85.62%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKAS-DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVS+HLFAV+QGLLKVLAGIDTNFTVT KA+ DED +F ELY FKW           ++N++GVVAGVS AIN+G ++WGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVV+W++LLA IFSLLWVR+DPFT +  GPDV QCGINC
Sbjct:  896 RNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDEDDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTIKARGPDVRQCGINC 1055          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 3.339e-68
Identity = 119/159 (74.84%), Postives = 136/159 (85.53%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGG+S+HLFAV+QGLLK+LAGIDTNFTVT KA+D+D DF ELY FKW           +IN+VGVVAG+S AIN+GYQSWGPLFGKLFF+FWVIVHLYPFLKGLMGRQNRTPTIVV+W++LLA IFSLLWVR+DPF  +  GPD  +CGINC
Sbjct:  869 RNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDDD-DFGELYAFKWTTLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTSKCGINC 1026          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 3.692e-67
Identity = 121/160 (75.62%), Postives = 134/160 (83.75%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRV-TGPDVEQCGINC 477
            RNEQFWVIGG S+HLFAV QGLLKVLAGIDTNFTVT KASDEDGDF ELY+FKW           VINLVG+VAG+SYAINSGYQSWGPLFGKLFF+ WVI+HLYPFLKGLMGRQNRTPTIV+VW+ILLA IFSLLWV++DPF +       + QCG+NC
Sbjct:  917 RNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDPFISPTQKAVALGQCGVNC 1076          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 3.692e-67
Identity = 121/160 (75.62%), Postives = 134/160 (83.75%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRV-TGPDVEQCGINC 477
            RNEQFWVIGG S+HLFAV QGLLKVLAGIDTNFTVT KASDEDGDF ELY+FKW           VINLVG+VAG+SYAINSGYQSWGPLFGKLFF+ WVI+HLYPFLKGLMGRQNRTPTIV+VW+ILLA IFSLLWV++DPF +       + QCG+NC
Sbjct:  917 RNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDPFISPTQKAVALGQCGVNC 1076          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 5.894e-65
Identity = 115/159 (72.33%), Postives = 135/159 (84.91%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVSSHLFAV QGLLKVLAG+DT+FTVT KA D++ +F+ELY FKW           ++N +GVVAGVS AIN+GY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV+VW+ILLA IFSLLWVR+DPF  +  GP +E+CG++C
Sbjct:  934 RNEQFWVIGGVSSHLFAVFQGLLKVLAGVDTSFTVTSKAGDDE-EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKNNGPLLEECGLDC 1091          
The following BLAST results are available for this feature:
BLAST of CX299687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CESA8_ORYSJ6.712e-7784.91Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA3_ARATH4.351e-7683.02Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA2_ORYSJ4.351e-7683.65Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI4.351e-7683.65Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA9_ORYSJ2.557e-6875.63Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI2.557e-6875.63Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA7_ARATH3.339e-6874.84Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA1_ORYSJ3.692e-6775.63Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI3.692e-6775.63Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA6_ORYSJ5.894e-6572.33Probable cellulose synthase A catalytic subunit 6 ... [more]

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Properties
Property NameValue
Genbank descriptionC07001B06SK NTLeaf1 Citrus clementina cDNA clone C07001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299687 ID=CX299687; Name=CX299687; organism=Citrus clementina; type=EST; length=479bp
AGAAACGAACAGTTTTGGGTTATTGGCGGCGTTTCATCCCATCTATTCGC
TGTTTTGCAAGGGCTTCTCAAAGTACTTGCTGGTATTGACACCAACTTCA
CTGTCACCTTCAAGGCATCAGATGAAGACGGCGATTTTACTGAGCTCTAT
ATGTTCAAATGGACAACACTACTTATTCCACCAACAACTCTTCTTGTCAT
AAACTTGGTTGGTGTAGTTGCGGGTGTCTCGTATGCCATCAACAGCGGGT
ATCAATCATGGGGTCCTCTCTTTGGTAAGCTATTCTTTGCCTTTTGGGTG
ATCGTCCATCTTTACCCCTTCCTCAAAGGTTTGATGGGACGCCAAAACCG
GACACCCACCATTGTTGTCGTGTGGACAATTCTCCTTGCCTGCATATTCT
CTTTACTATGGGTGCGAGTTGATCCCTTTACCACCAGAGTCACTGGTCCT
GATGTCGAGCAATGTGGAATCAACTGCTG
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