CX299699

Overview
NameCX299699
Unique NameCX299699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299699_ssr383 microsatellite CX299699_ssr383:383..396. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299699 vs. ExPASy Swiss-Prot
Match: DAT_CATRO (Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 3 
Query:   27 VDFYMYSDLSRLPMYDTDFGLGKPVWVTI-PNYMHNMIMLMSTRNGE--GIEALVSLSEEDMALFERDEELLAF 239
            +D Y+     R P YD DFG GKP+WV +   Y+ N +++M    G+  GIEA+VS  +E M+ FE++E+LL F
Sbjct:  363 IDAYLSDSWCRFPFYDVDFGWGKPIWVCLFQPYIKNCVVMMDYPFGDDYGIEAIVSFEQEKMSAFEKNEQLLQF 436
The following BLAST results are available for this feature:
BLAST of CX299699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DAT_CATRO7.498e-1143.24Deacetylvindoline O-acetyltransferase OS=Catharant... [more]
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Properties
Property NameValue
Genbank descriptionC07001C11SK NTLeaf1 Citrus clementina cDNA clone C07001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299699 ID=CX299699; Name=CX299699; organism=Citrus clementina; type=EST; length=413bp
TAATGCACGGGGTCGAAGGAGATGCAGTAGATTTTTATATGTATTCAGAC
TTATCCAGACTCCCAATGTACGATACAGATTTCGGATTGGGAAAGCCCGT
ATGGGTAACAATCCCTAATTATATGCACAACATGATAATGCTGATGAGTA
CAAGAAACGGTGAGGGAATAGAAGCGTTGGTGAGTCTGAGTGAAGAAGAT
ATGGCTTTGTTTGAACGAGACGAAGAGCTTCTTGCATTTGCTGACCCTAA
TCCAAGCGTCTTGCCAGTAGCAAATCACTCAACAAGGAAATTCGCAGCTT
GATCCGTTTGCCTTCTTGATGTGGATGTTTAAAATTGAGGTATTTTCCTT
TTTAAAAAAAAAAAAAAAAAACCGAGACTAGTTCTCTCTCTCTCTCTATC
GGGGGGGCCCGGT
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