CX299922

Overview
NameCX299922
Unique NameCX299922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299922 vs. ExPASy Swiss-Prot
Match: HDHD3_BOVIN (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Bos taurus GN=HDHD3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 41/113 (36.28%), Postives = 58/113 (51.33%), Query Frame = 2
Query:    2 EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXXKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 340
            E+LY  +++   W + +  AE   +  RK G+KLAVVSNFD RL  +L  +     FD           KP+P IF +A  L  V+P    H+GD  + D  GAR  G  ++L
Sbjct:   99 EQLYKDFSSPSTWQVLEG-AEATLRGCRKRGLKLAVVSNFDRRLEDILEGVGLREHFDFVLTSEAAGWPKPDPRIFHEALHLAQVEPAVGAHIGDSYQRDYKGARAVGMHSFL 210          
BLAST of CX299922 vs. ExPASy Swiss-Prot
Match: HDHD3_XENLA (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Xenopus laevis GN=hdhd3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 42/113 (37.17%), Postives = 58/113 (51.33%), Query Frame = 2
Query:    2 EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXXKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 340
            ++LY  ++T   W L  P A +   +    G+++AV+SNFD RL  +LR    + +FD           KP+  IF KA  L  V P  AVHVGDD  ND   AR  G  ++L
Sbjct:   95 KQLYQDFSTAHNWALV-PGAREALDSCTNLGLRMAVISNFDRRLEELLRQCCLERYFDFVVTAESAGVAKPHLGIFHKALSLAKVPPHQAVHVGDDYVNDYCAARMVGMHSYL 206          
BLAST of CX299922 vs. ExPASy Swiss-Prot
Match: HDHD3_MOUSE (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Mus musculus GN=Hdhd3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 2
Query:    2 EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXXKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 340
            ++LY  +++   W + +  AE   K  RK G+KLAVVSNFD RL  +L  L     FD           KP+P IF +A     V+P  A HVGD    D  G++  G  ++L
Sbjct:   99 DQLYEDFSSPFTWQVLEG-AEMTLKGCRKRGLKLAVVSNFDRRLEDILTGLGLREHFDFVLTSEAVGCPKPDPRIFREALQRACVEPAVAAHVGDSYLCDYQGSQAVGMHSFL 210          
The following BLAST results are available for this feature:
BLAST of CX299922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HDHD3_BOVIN4.693e-1336.28Haloacid dehalogenase-like hydrolase domain-contai... [more]
HDHD3_XENLA2.329e-1237.17Haloacid dehalogenase-like hydrolase domain-contai... [more]
HDHD3_MOUSE1.510e-1136.28Haloacid dehalogenase-like hydrolase domain-contai... [more]
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Properties
Property NameValue
Genbank descriptionC07004A09SK SaltLeaf1 Citrus clementina cDNA clone C07004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299922 ID=CX299922; Name=CX299922; organism=Citrus clementina; type=EST; length=655bp
TGAAGAACTTTATAACTACTATACCACTGAAAAGGCATGGCACCTCTGTG
ATCCTGAAGCTGAAAAGGTATTTAAGGCTATCAGAAAAGCAGGAGTCAAA
TTGGCTGTTGTGTCAAACTTTGATACTCGGTTAAGACCTGTGTTGCGAGC
TCTAAATTGTGATCATTGGTTCGATGCTGTTGCAGTGTCAGCTGAAGTTG
AAGCAGAGAAGCCAAATCCAACAATATTCCTAAAAGCTTGTGATTTGTTG
GGAGTAAAACCTGAGGATGCTGTACATGTAGGGGATGATCGTAGGAATGA
TGTGTGGGGTGCCAGGGATGCAGGTTGTGATGCTTGGCTTTGGGGAAGTG
ATGTCCACTCCTTTAAGGAGGTTGCTCAAAGGATAGGGGTCAAAGTTTAA
GAGAAGGCTGATCTTAACCGACCGCTCAGAAGAATGCTTTATGTACAGGT
TTGTTTGAGCTTTTGGTGAGAGATCTGTGTATATTCTGCATCGGACGGAT
GTGGGAACAGACTAGATAGGACTGGTTGTAGTAAGACAAACTTCAGCTTG
TTTATGTAATAAATAATTTACAATTTCAGCATCCAACTGAAGAATGCTCT
GTTTAGTATAGCTTATCAAATAGAGCTTATTTAAGTAGAAAAAAAAAAAA
AAAAA
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