CX299923

Overview
NameCX299923
Unique NameCX299923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length312
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1043..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  205 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  218 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  222 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  150 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  199 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.404e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   60 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116          
The following BLAST results are available for this feature:
BLAST of CX299923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB24_TOBAC3.323e-27100.00Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL3.323e-27100.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC3.323e-27100.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ3.323e-27100.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ3.323e-27100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY5.669e-2798.25Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY5.669e-2798.25Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_CUCSA5.669e-2798.25Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA5.669e-2798.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2D_SOLLC7.404e-2798.25Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC07004A10SK SaltLeaf1 Citrus clementina cDNA clone C07004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299923 ID=CX299923; Name=CX299923; organism=Citrus clementina; type=EST; length=312bp
AGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATG
TTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAA
CTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACG
CCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCT
CTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGC
TTTAATTTGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAA
AAAAAAAAAAAA
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