CX299928

Overview
NameCX299928
Unique NameCX299928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299928_ssr1 microsatellite CX299928_ssr1:1..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX299928 vs. ExPASy Swiss-Prot
Match: CLPS_SYNE7 (ATP-dependent Clp protease adapter protein clpS OS=Synechococcus elongatus (strain PCC 7942) GN=clpS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.107e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:  232 KRKTSPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSVVIVCSQADAEEHCMQLRGNGLLSSIEP 471
            KRK +P YRV+LHND+FN  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL SSIEP
Sbjct:   14 KRKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEPAEFYCEQLKSHGLSSSIEP 93          
BLAST of CX299928 vs. ExPASy Swiss-Prot
Match: CLPS_SYNP6 (ATP-dependent Clp protease adapter protein clpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  232 KRKTSPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSVVIVCSQADAEEHCMQLRGNGL 453
            KRK +P YRV+LHND+FN  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL
Sbjct:   14 KRKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEPAEFYCEQLKSHGL 87          
BLAST of CX299928 vs. ExPASy Swiss-Prot
Match: CLPS_SYNS9 (ATP-dependent Clp protease adapter protein clpS OS=Synechococcus sp. (strain CC9902) GN=clpS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  172 LLERPVITAPGRESEFDL--KKKRKTSPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSVVIVCSQADAEEHCMQLRGNGLLSSIEP 471
            + E     +PG  +  D   ++ RK SP Y+V+LHND  N  EYV+  L +V+P ++  +A+ +M EAH  G+ +VIVC    AE +C  L+  GL SSIEP
Sbjct:    1 MAEETPTRSPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102          
BLAST of CX299928 vs. ExPASy Swiss-Prot
Match: CLPS_GLOVI (ATP-dependent Clp protease adapter protein clpS OS=Gloeobacter violaceus GN=clpS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  232 KRKTSPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSVVIVCSQADAEEHCMQLRGNGLLSSIEP 471
            +RK  P Y+V+LHND+     YV++VLMK IP M    A  IM EAH  G++VVIVC+   AE +   L  + L S+ EP
Sbjct:   12 QRKPMPLYKVLLHNDDHTPMNYVIEVLMKTIPKMQPSKARKIMLEAHNGGVAVVIVCALEHAEFYSESLNRHNLTSTYEP 91          
BLAST of CX299928 vs. ExPASy Swiss-Prot
Match: CLPS_PROM5 (ATP-dependent Clp protease adapter protein clpS OS=Prochlorococcus marinus (strain MIT 9515) GN=clpS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  235 RKTSPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSVVIVCSQADAEEHCMQLRGNGLLSSIE 468
            +  SP Y+V+LHND  N  EY+   L +V+P ++  +A+ IM EAH NG+ +VIVC    AE +   L+  G+ SSIE
Sbjct:   25 KNKSPKYKVLLHNDPVNSMEYITIALREVVPQLSEQDAIAIMLEAHNNGVGLVIVCDLEPAEFYSESLKSKGISSSIE 102          
The following BLAST results are available for this feature:
BLAST of CX299928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLPS_SYNE72.107e-1957.50ATP-dependent Clp protease adapter protein clpS OS... [more]
CLPS_SYNP67.493e-1755.41ATP-dependent Clp protease adapter protein clpS OS... [more]
CLPS_SYNS91.196e-1441.18ATP-dependent Clp protease adapter protein clpS OS... [more]
CLPS_GLOVI4.255e-1246.25ATP-dependent Clp protease adapter protein clpS OS... [more]
CLPS_PROM55.557e-1243.59ATP-dependent Clp protease adapter protein clpS OS... [more]
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Properties
Property NameValue
Genbank descriptionC07004B03SK SaltLeaf1 Citrus clementina cDNA clone C07004B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299928 ID=CX299928; Name=CX299928; organism=Citrus clementina; type=EST; length=681bp
AGAGAGAGAGAGAGAGAACTGGAGACTGCAATTTGTGGGAGACTAGCTCT
GTCACCCCACACCGTCTTCAATTCCAAACCAGGGGACAAATCCTTGCTTT
GTGGAGGATCATGCATCAACCGCAGCGTCCTCATGACTGTGTTAGCATCA
GCACCAGGTAAAGGCGGAGGGCTGTTGGAGAGGCCAGTTATAACTGCTCC
TGGTCGTGAATCTGAGTTTGATTTGAAGAAAAAAAGGAAAACCAGTCCAC
CCTACCGTGTTATACTACACAACGACAACTTTAACAAACGAGAGTATGTT
GTCCAAGTACTGATGAAGGTTATACCCGGGATGACTCTTGACAATGCAGT
AAACATCATGCAAGAAGCGCACTACAATGGCTTGTCTGTTGTAATTGTTT
GTTCTCAGGCTGATGCTGAGGAACACTGCATGCAACTGAGGGGCAATGGG
CTGCTGAGTTCCATCGAACCTGCAAGTGGTGGATGCTAAAGATGGTCCTG
GTGAAAACTCCAATAGGTTTATTACTGTCAAAATACCCTTTTCTAAGAAG
TAGATAGTGTATATAAAGTCAGCAGTGATCATATTTGTATGAACATCAAG
TCATCCTATGGTCAAATTAAAGACAAAAGGGTGGTAGTAATTTTGAATAA
AGTGAGAATCCAAGAAAAAAAAAAAAAAAAA
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