CX299929

Overview
NameCX299929
Unique NameCX299929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299929_ssr1 microsatellite CX299929_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299929 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.933e-14
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = -3 
Query:  417 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 581
            WRPAIT+KQIL+GIQ+LL++PN  DPAQ + Y +F QD  EY++RVR QAK++ P
Sbjct:  103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVRAQAKKFSP 157
[Close]
BLAST of CX299929 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = -3 
Query:  417 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 581
            W+PAIT+KQIL+GIQDLLD PN A PAQT+ Y +F +D  EY++RVR QA++  P
Sbjct:  103 WKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 157
[Close]
BLAST of CX299929 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = -3 
Query:  417 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 581
            WRPAIT+KQIL+GIQ+LL++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:  103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157
[Close]
BLAST of CX299929 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = -3 
Query:  417 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 581
            WRPAIT+KQIL+GIQ+LL++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:  103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157
[Close]
BLAST of CX299929 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = -3 
Query:  417 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 581
            WRPAIT+KQIL+GIQ+LL++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:  103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157
[Close]
BLAST of CX299929 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = -3 
Query:  417 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 581
            WRPAIT+KQIL+GIQ+LL++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:  103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157
[Close]
BLAST of CX299929 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = -3 
Query:  417 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 581
            WRPAIT+KQIL+GIQ+LL++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:  103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157
[Close]
BLAST of CX299929 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = -3 
Query:  417 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 581
            WRPAIT+KQIL+GIQ+LL++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:  103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157
[Close]
BLAST of CX299929 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = -3 
Query:  417 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 581
            WRPAIT+KQIL+GIQ+LL++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:  103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157
[Close]
BLAST of CX299929 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = -3 
Query:  417 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 581
            WRPAIT+KQIL+GIQ+LL++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:  103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFSP 157
The following BLAST results are available for this feature:
BLAST of CX299929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBC9_PAGMA1.933e-1461.82SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC9_SCHPO5.624e-1461.82SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC9_XENTR1.636e-1358.18SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA1.636e-1358.18SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.636e-1358.18SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.636e-1358.18SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE1.636e-1358.18SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN1.636e-1358.18SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK1.636e-1358.18SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC9B_DANRE1.636e-1358.18SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]

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Properties
Property NameValue
Genbank descriptionC07004B04SK SaltLeaf1 Citrus clementina cDNA clone C07004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299929 ID=CX299929; Name=CX299929; organism=Citrus clementina; type=EST; length=583bp
AGAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTAGTC
TTAAATGCCAAAAAATTTCATAATTATGTATTAGCAACTATATCACCTAC
TCCATCTTTGTATACTTAATTGAAAAGCCAACACATAACTTCATTACAAT
CAGCATAATTTGCAATATCCATAACTACCAGCATAATTTGTAACACCCTT
AAAAGTTGCCAAACGGTCAACAGAACAAGAAGAAAACAAGACAGCCAATA
AAAGCACCCTTCACAAATGATACAGGTAGCATATTATAACCATGTTCAAC
ACCAAAGTTGGTGCACTTGTAACTGAGTTTACTGTAGTAAATAATGATAG
ACATAAACCATGTGAGGTAACAAATGAGTTACTCATATCCATTTAAGCAA
GCTTGCATTATAGAACAGGTGGATATTGCTTGGCCTGCTGTCGCACCCTT
CTCTTGTACTCGGCAGGATCCTGGATGAAAAGCTGGTATCCATCAGTTTG
TGCAGGATCAGCAGGATTGGGTTGATCCAGCAAATCCTGAATGCCCACTA
AAATTTGCTTCACAGTAATGGCAGGTCTCCACC
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