CX299939

Overview
NameCX299939
Unique NameCX299939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 9.312e-104
Identity = 176/223 (78.92%), Postives = 201/223 (90.13%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYAGVLYGLGVENGQILI 685
            G+FKS+ +YHY+TLK+NV++LK+IQLGLTFS+E GNLPTCGTDKYC+WQFNFREFD++ DIFA DSIELLKQSGI+  KN   GID+ RF EL+MSSGIVL++++HWVTFHSGYDFGYLLKLLTCQNLPD+Q +FF LI +YFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLT+ TFR LK NFF   L KY+GVLYGLGVENGQ+ I
Sbjct:   52 GTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFVGPLHKYSGVLYGLGVENGQVAI 274          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 375.941 bits (964), Expect = 1.216e-103
Identity = 175/223 (78.48%), Postives = 203/223 (91.03%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTD-KYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYAGVLYGLGVENGQIL 682
            G+FK++ EYHY+TLK+NV++LK+IQLGLTFSDE GNLPTCGTD KYC+WQFNFREFD+  DI+A DSIELL+QSGI+F KNNE GID+ RF EL+MSSGIVL++++HWVTFHSGYDFGYLLKLLTCQNLP+TQ  FF +I +YFP VYDIKHLMKFCNSLHGGLNKLAELL+VERVGICHQAGSDSLLT+ TFR L+ NFF  S+EKY+GVLYGLGVENGQI+
Sbjct:   52 GTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTSCTFRKLQENFFIGSMEKYSGVLYGLGVENGQIV 274          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.793e-92
Identity = 157/218 (72.02%), Postives = 187/218 (85.78%), Query Frame = 2
Query:   20 SFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYAGVLYGLGVENG 673
            +FK + + +Y+TLK NVD+LKLIQ+GLTFSDENGNLPTCGTDK+C+WQFNFREF++ EDI+A++SIELL+Q GI+F KN E GID +RFGELMMSSGIVL+D++ WVTFH GYDFGYL+KLLTC+ LP  Q +FF L+ +YFPTVYDIKHLM FCN L GGLN+LAEL+ VERVGICHQAGSDSLLT  +FR LK  +F  S EKY GVLYGLGVE+G
Sbjct:   53 TFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRKLKERYFPGSTEKYTGVLYGLGVEDG 270          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.146e-77
Identity = 138/208 (66.35%), Postives = 169/208 (81.25%), Query Frame = 2
Query:   35 YEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYAGVLYGL 658
            YEY+Y TLK+NV+MLKLIQLGLT SDE GNLPTCGT+K C+WQFNFREF+V  D+FA DSIELL++S I+  KNNE G+DA RF EL+M SG+VL+D +HWVTFH GYDFGYLLKLL+ + LP+   +FF+ +  +FP VYDIK+LM FC +L+GGL K+AELL V+RVGI HQAGSDSLLT  TF  +K  FF+ SL KY+G L+GL
Sbjct:   68 YEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLRTFIKMKEFFFTGSLLKYSGFLFGL 275          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.106e-63
Identity = 120/226 (53.10%), Postives = 163/226 (72.12%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673
            G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+ M F EL+M+SG+VL + + W++FHSGYDFGYL+K+L+   LPD +V+FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F  ++  FF   ++  KY G LYGLG     V+NG
Sbjct:   52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.042e-62
Identity = 119/226 (52.65%), Postives = 163/226 (72.12%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673
            G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F  ++  FF   ++  KY G LYGLG     V+NG
Sbjct:   52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 1.042e-62
Identity = 119/226 (52.65%), Postives = 163/226 (72.12%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673
            G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F  ++  FF   ++  KY G LYGLG     V+NG
Sbjct:   52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.042e-62
Identity = 119/226 (52.65%), Postives = 163/226 (72.12%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673
            G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F  ++  FF   ++  KY G LYGLG     V+NG
Sbjct:   52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.042e-62
Identity = 119/226 (52.65%), Postives = 163/226 (72.12%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673
            G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F  ++  FF   ++  KY G LYGLG     V+NG
Sbjct:   52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.320e-62
Identity = 119/226 (52.65%), Postives = 161/226 (71.24%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673
            G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ + +FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F  ++  FF   ++  KY G LYGLG     V+NG
Sbjct:   52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
The following BLAST results are available for this feature:
BLAST of CX299939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1F_ARATH9.312e-10478.92Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1G_ARATH1.216e-10378.48Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH4.793e-9272.02Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1B_ARATH1.146e-7766.35Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CNOT7_DANRE6.106e-6353.10CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
CNOT7_MOUSE1.042e-6252.65CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_HUMAN1.042e-6252.65CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK1.042e-6252.65CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]
CNOT7_BOVIN1.042e-6252.65CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
CNOT7_XENLA2.320e-6252.65CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004C03SK SaltLeaf1 Citrus clementina cDNA clone C07004C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299939 ID=CX299939; Name=CX299939; organism=Citrus clementina; type=EST; length=740bp
GAATTCGGCACGAGGGGGCTCTTTCAAGAGCAGTTATGAATATCACTACC
AAACTTTGAAAAGCAATGTTGATATGTTAAAGCTCATCCAGTTGGGTCTG
ACATTTTCAGATGAGAATGGTAACTTGCCCACTTGTGGGACAGATAAATA
TTGTGTTTGGCAATTTAATTTTCGGGAGTTCGATGTTAATGAGGATATCT
TTGCCAATGATTCGATTGAGCTTTTGAAACAAAGTGGGATTAATTTTACA
AAAAATAATGAGATAGGTATTGATGCAATGAGATTTGGTGAGTTAATGAT
GTCATCTGGGATTGTTTTGAGTGATAGCATGCATTGGGTGACATTTCATA
GTGGGTATGATTTTGGGTATTTGCTAAAGCTTTTGACGTGCCAGAATCTG
CCTGATACGCAAGTGGAGTTCTTTAATTTGATCAGAATTTATTTTCCGAC
CGTGTATGATATCAAGCACTTGATGAAGTTTTGTAATAGCCTTCATGGAG
GATTGAACAAACTTGCTGAGTTGTTGGAAGTTGAAAGAGTTGGGATTTGT
CATCAAGCAGGTTCAGATAGTTTGCTTACAGCTAGTACATTCCGAANATT
GAAAGANAACTTCTTTAGCAGCTCTTTGGAAAAATATGCTGGTGTCTTAT
ATGGTTTAGGCGTTGAGAATGGACAAATACTCATTGAAAGAGGGGGAAAA
AGGGAGTTTAGAAGCTGTTTATTTATGTGTAGTGTGCGTG
back to top