CX305104

Overview
NameCX305104
Unique NameCX305104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length326
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305104 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.587e-22
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = -1
Query:   93 MSEKLADDINKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTD--VSADQVDRTPIRELIS 326
            MSEKLA+DI+  V+ II  AYEVAK H+RNNREAIDKLVDVL+EKETL+GDEFRA+LSE+TD  ++ D   R  I +LIS
Sbjct:  608 MSEKLAEDIDSCVKKIIGDAYEVAKKHVRNNREAIDKLVDVLLEKETLTGDEFRAILSEYTDQPLNTDGDVRIRINDLIS 687          
BLAST of CX305104 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.595e-19
Identity = 42/63 (66.67%), Postives = 57/63 (90.48%), Query Frame = -1
Query:  138 MSEKLADDINKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDV 326
            MSEKLA+DI+  V+ + +SAYE+A +HI+NNREA+DKLV+VL+EKET+ GDEFRA+LSEFT++
Sbjct:  610 MSEKLAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEI 672          
BLAST of CX305104 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.862e-19
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = -1
Query:  126 MSEKLADDINKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDVSADQ 326
            MSE+LA DI+  VR I++ AYEVAK H+R NR AID+LVDVLMEKETL GDEFRA+LSE  D+  ++
Sbjct:  607 MSERLAADIDAAVRTIVDEAYEVAKAHVRRNRAAIDQLVDVLMEKETLGGDEFRAILSEHVDIGKER 673          
BLAST of CX305104 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.747e-18
Identity = 40/63 (63.49%), Postives = 56/63 (88.89%), Query Frame = -1
Query:  138 MSEKLADDINKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDV 326
            MSEKLA+DI+  V+ + + AYE+A + IRNNREA+DK+V++L+EKET+SGDEFRA+LSEFT++
Sbjct:  603 MSEKLANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEI 665          
BLAST of CX305104 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.747e-18
Identity = 41/66 (62.12%), Postives = 57/66 (86.36%), Query Frame = -1
Query:  129 MSEKLADDINKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDVSAD 326
            MSEKLA+DI+  V+ + + AYE+A + IR+NREA+DK+V+VL+EKETLSGDEFRA+LSEFT++  +
Sbjct:  598 MSEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVE 663          
The following BLAST results are available for this feature:
BLAST of CX305104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FTSH6_ARATH5.587e-2267.50Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH2_ARATH2.595e-1966.67Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ORYSJ9.862e-1965.67Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH8_ARATH3.747e-1863.49Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ORYSJ3.747e-1862.12Cell division protease ftsH homolog 2, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC18001B03Rv Drought1 Citrus clementina cDNA clone C18001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305104 ID=CX305104; Name=CX305104; organism=Citrus clementina; type=EST; length=326bp
TTTTTTTTTTTTTTTTTTTTTTTTACAAAATTTTGTGTACTGCAGCATGA
CTACAAAGTAAGGGTACAATCTATTAATGACACTCTTTAGGCGCTAATCA
ACTCTCGGATAGGAGTTCTATCAACTTGATCTGCAGATACATCAGTAAAT
TCTGATAGAACCGCCCTGAATTCATCTCCTGAAAGTGTTTCCTTCTCCAT
AAGCACATCCACAAGCTTATCAATGGCTTCCCTGTTATTCCTTATGTGAT
TCTTTGCAACCTCGTAAGCACTTTCAATTATATTTCTCACTGTTTTATTA
ATGTCGTCTGCAAGTTTTTCTGACAT
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