CX308554

Overview
NameCX308554
Unique NameCX308554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig942 contig Ccv1_Contig942:76..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.999e-21
Identity = 64/148 (43.24%), Postives = 83/148 (56.08%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNSMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSINGPPH 444
            GQKVT+DNPSPRAYF+C+ A S C VKKKVQR +ED+S LVATYEGEHNH +  S +  ++ L  + S   S           S    VT  + +  S + T P          K  +E+  +SLTKDP+FT A+A AV   +    H
Sbjct:  155 GQKVTRDNPSPRAYFKCACAPS-CSVKKKVQRSVEDQSVLVATYEGEHNHPMP-SQIDSNNGLNRHISHGGSASTPVAANRRSSLTVPVT-TVDMIESKKVTSPTSRIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVTGKLYQQNH 299          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 67/146 (45.89%), Postives = 85/146 (58.22%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQ---ETRPPRNSMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSI 429
            GQKVT+DNPSPRAYFRCS A S CPVKKKVQR  ED S LVATYEG HNH      LG ++S  +               T+    S VTLDL ++G ++   E     N+MQ    +  I++  +SLTKD  FT A+A A++  +
Sbjct:  185 GQKVTRDNPSPRAYFRCSFAPS-CPVKKKVQRSAEDPSLLVATYEGTHNH------LGPNASEGD--------------ATSQGGSSTVTLDL-VNGCHRLALEKNERDNTMQ----EVLIQQMASSLTKDSKFTAALAAAISGRL 304          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK60_ARATH (Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.578e-19
Identity = 59/144 (40.97%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQ-ETRPPRNSMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSI 429
            GQK+T+DNPSPRAYFRCS + S C VKKKVQR  ED SFLVATYEG HNH    +S+ ++                            V LDL   G    E +  R ++Q    +  +++  +SLTKDP FT A+A A++  +
Sbjct:  155 GQKITRDNPSPRAYFRCSFSPS-CLVKKKVQRSAEDPSFLVATYEGTHNHTGPHASVSRT----------------------------VKLDLVQGGLEPVEEKKERGTIQ----EVLVQQMASSLTKDPKFTAALATAISGRL 265          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.256e-17
Identity = 66/224 (29.46%), Postives = 98/224 (43.75%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLT---------------NYCSPKS----SIVHCPDYQTTDSFGS---DVTLDLTLS-----GSNQET-------------RPPRNSMQVCD------------------------------------DKKKIEEYVASLTKDPSFTIAVADAVASSINGPPH 444
            GQK+ K NP PRAY+RC+MA+ GCPV+K+VQRC ED+S L+ TYEG HNH +  +++  +S+ T                  +P +    +++ C     T S  +    VTLDLT S     GSN  +             RP +   Q+ +                                        + + + +LT DP+FT A+A  ++S ING  H
Sbjct:  321 GQKMAKGNPCPRAYYRCTMAT-GCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMATISASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPHVIGQALYNQSKFSGLQFSGGSPSTAAFSQSHAVADTITALTADPNFTAALAAVISSMINGTNH 543          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.864e-17
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNSMQ 330
            GQK+ K NP PRAY+RC++A+S CPV+K+VQRC ED S L++TYEG HNH +  S+   +S+ +   S   S          D  G    L+ +LSG+N   +P  + +Q
Sbjct:  200 GQKIAKGNPCPRAYYRCTIAAS-CPVRKQVQRCSEDMSILISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADLHG----LNFSLSGNNITPKPKTHFLQ 304          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.589e-16
Identity = 64/216 (29.63%), Postives = 90/216 (41.67%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSS-------------------IVHCPDYQTTDSFGS---DVTLDLTLS---------------------GSNQETRP---------------------PRNSMQVCDDK---KKIEEYVASLTKDPSFTIAVADAVASSINGPPHR 447
            GQK+ K NP PRAY+RC+MA  GCPV+K+VQRC ED+S L+ TYEG HNH +  ++   +S+ T   S   S                   I+ C     T S  +    +TLDLT S                     G N    P                     P   +Q+       + +    A++  DP+F  A+A A+ S +NG  H+
Sbjct:  306 GQKMAKGNPCPRAYYRCTMAG-GCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARAILPCSSSMATISASAPFPTITLDLTNSPNGNNPNMTTNNPLMQFAQRPGFNPAVLPQVVGQAMYNNQQQSKFSGLQLPAQPLQIAATSSVAESVSAASAAIASDPNFAAALAAAITSIMNGSSHQ 520          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.208e-15
Identity = 64/202 (31.68%), Postives = 91/202 (45.05%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSL---------------GQSSSLTNY------CSPKSSIVHCPDYQTTDSFGS------DVTLDLT---------------------LSGSNQETRPPRNSMQV---------CDDKKKIEEYVASLTKDPSFTIAVADAVASSING 435
            GQK+ K NP PRAY+RC+MA  GCPV+K+VQRC ED + L  TYEG HNH +  S+                G SSS  +        +  SS  H   Y +T +  S       +TLDLT                     L  +NQ      N+ Q+            ++ ++   A++  DP+FT A+A A+++ I G
Sbjct:  248 GQKMAKGNPCPRAYYRCTMAV-GCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSNLHQTLSSPSATSSSSFYHNFPYTSTIATLSASAPFPTITLDLTNPPRPLQPPPQFLSQYGPAAFLPNANQIRSMNNNNQQLLIPNLFGPQAPPREMVDSVRAAIAMDPNFTAALAAAISNIIGG 448          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.208e-15
Identity = 62/206 (30.10%), Postives = 91/206 (44.17%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSS--------------------IVHCPDYQTTDSFGS---DVTLDLTLS--GSNQETRP-----PRNSM-------------------------------QVCDDKKKIEEYVASLTKDPSFTIAVADAVASSING 435
            GQK+ K NP PRAY+RC+MA  GCPV+K+VQRC ED++ L+ TYEG HNH +  +++  +S+ T   S   S                    I+ C     T S  +    +TLDLT S  G+N    P      R+ +                               Q  +  + +    A++  +P+F  A+A A+ S ING
Sbjct:  301 GQKMAKGNPCPRAYYRCTMAV-GCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLARTILPCSSSMATISASAPFPTITLDLTESPNGNNPTNNPLMQFSQRSGLVELNQSVLPHMMGQALYYNQQSKFSGLHMPSQPLNAGESVSAATAAIASNPNFAAALAAAITSIING 505          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.919e-15
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTN----YCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQET 306
            GQK  K NP PRAY+RC++A  GCPV+K+VQRC+ED S L+ TYEG HNH +   +   +S+ +           ++ H   YQT  +  S +      S  N  T
Sbjct:  244 GQKTAKGNPCPRAYYRCTVAP-GCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASTSPFLLLDSSDNLSHPSYYQTPQAIDSSLITYPQNSSYNNRT 348          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.277e-14
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSS 186
            GQK+ K NP PRAY+RC++A  GCPV+K+VQRC +D S L+ TYEG H+H +  S+   +S+
Sbjct:  236 GQKIAKGNPCPRAYYRCTVAP-GCPVRKQVQRCADDMSILITTYEGTHSHSLPLSATTMAST 296          
The following BLAST results are available for this feature:
BLAST of CX308554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
WRK40_ARATH5.999e-2143.24Probable WRKY transcription factor 40 OS=Arabidops... [more]
WRK18_ARATH2.977e-2045.89WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRK60_ARATH9.578e-1940.97Probable WRKY transcription factor 60 OS=Arabidops... [more]
WRKY6_ARATH5.256e-1729.46WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK61_ARATH6.864e-1741.82Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRK31_ARATH7.589e-1629.63Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK47_ARATH2.208e-1531.68Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK42_ARATH2.208e-1530.10Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRKY9_ARATH4.919e-1539.62Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK72_ARATH9.277e-1453.23Probable WRKY transcription factor 72 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC21001C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308554 ID=CX308554; Name=CX308554; organism=Citrus clementina; type=EST; length=650bp
GGCCAAAAGGTTACTAAAGATAATCCCTCACCTCGGGCTTATTTCAGATG
TTCAATGGCTTCTTCTGGATGTCCTGTAAAAAAAAAGGTTCAAAGATGCA
TGGAGGACAAGTCATTTCTCGTTGCAACTTATGAAGGAGAACACAACCAT
GATGTTCAATGTAGCTCACTTGGGCAATCCTCCTCTTTAACAAATTATTG
CTCACCCAAAAGCTCAATTGTACATTGCCCAGATTATCAAACAACTGATT
CTTTTGGATCAGATGTCACACTTGATCTTACTCTATCTGGGTCCAATCAA
GAAACTAGACCCCCTAGAAACTCGATGCAAGTCTGTGACGATAAAAAGAA
GATTGAAGAATATGTGGCATCCTTAACTAAAGATCCCAGCTTCACCATAG
CTGTAGCCGATGCTGTTGCAAGTTCCATCAATGGCCCCCCACATAGACCA
ATGTGAACATTTGGGGACTGATACATGGATTCTGTATCTTATTCGTAACT
TAAGAATATGTGGCATCCTTAACTAAAGATCCCAGCTTCACCATAGTTTT
AGCCGATGCTGTTGCAAGTTCCATCAATGGCCCACATAGACCAATGTGAA
CATTTGGGGACTGATACATGGATTCTGTATCTTATTCGTAATTAAGGGAG
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