CX308557

Overview
NameCX308557
Unique NameCX308557
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length461
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig747 contig Ccv1_Contig747:21..481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZIP5_ARATH (Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 9.568e-43
Identity = 85/132 (64.39%), Postives = 100/132 (75.76%), Query Frame = 2
Query:    2 SESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            S+SP T K L AAL FHQ FEG+GLGGCI Q  F    + I+++FFS+TTP         SS YD++ PTALIV+G+ NAA+AGILIYMSLVD LAADFM+PKMQ N RLQ  AH+SLL+GAG MSLLAKWA
Sbjct:  229 SQSPDTAKALFAALMFHQCFEGLGLGGCIAQGNFNCMSITIMSIFFSVTTPVGIAVGMAISSSYDDSSPTALIVQGVLNAASAGILIYMSLVDFLAADFMHPKMQSNTRLQIMAHISLLVGAGVMSLLAKWA 360          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZIP3_ARATH (Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 8.955e-41
Identity = 83/132 (62.88%), Postives = 98/132 (74.24%), Query Frame = 2
Query:    2 SESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            S+SP   K L  AL FHQ FEG+GLGGCI Q KFK   V I++ FF++TTP         ++ YDE+ PTALIV+G+ NAA+AGILIYMSLVDLLAADF +PKMQ N  LQ  AH++LLLGAG MSLLAKWA
Sbjct:  208 SQSPDAAKALFIALMFHQCFEGLGLGGCIAQGKFKCLSVTIMSTFFAITTPIGIVVGMGIANSYDESSPTALIVQGVLNAASAGILIYMSLVDLLAADFTHPKMQSNTGLQIMAHIALLLGAGLMSLLAKWA 339          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZIP1_ARATH (Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.133e-35
Identity = 78/134 (58.21%), Postives = 97/134 (72.39%), Query Frame = 2
Query:    2 SESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSF--YDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            S+S  TIKPL+AAL+FHQFFEG+GLGGCI+ A  KS+   ++A FFS+T P         SS   Y +    A++VEG+ NAA+AGILIYMSLVDLLA DFMNP++Q N  L   A++SL+LGAG MSLLA WA
Sbjct:  222 SQSIDTIKPLMAALSFHQFFEGLGLGGCISLADMKSKSTVLMATFFSVTAPLGIGIGLGMSSGLGYRKESKEAIMVEGMLNAASAGILIYMSLVDLLATDFMNPRLQSNLWLHLAAYLSLVLGAGSMSLLAIWA 355          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.524e-35
Identity = 71/132 (53.79%), Postives = 98/132 (74.24%), Query Frame = 2
Query:    2 SESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            S+SP TI+PL+AAL+FHQFFEG  LGGCI+QA+F+++   I+A FF+LTTP         +S ++ + P AL+ EGI ++ +AGIL+YM+LVDL+AADF++ +M  N RLQ  ++V L LGAG MS LA WA
Sbjct:  243 SQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFRNKSATIMACFFALTTPLGIGIGTAVASSFNSHSPGALVTEGILDSLSAGILVYMALVDLIAADFLSKRMSCNLRLQVVSYVMLFLGAGLMSALAIWA 374          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.253e-34
Identity = 71/132 (53.79%), Postives = 98/132 (74.24%), Query Frame = 2
Query:    2 SESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            S+SP TI+PL+AAL+FHQFFEG  LGGCI+QA+F+++   I+A FF+LTTP         +S ++ +   AL+ EGI ++ +AGIL+YM+LVDL+AADF++ KM+ N RLQ  ++V L LGAG MS LA WA
Sbjct:  258 SQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFRNKSATIMACFFALTTPIGIGIGTAVASSFNSHSVGALVTEGILDSLSAGILVYMALVDLIAADFLSTKMRCNFRLQIVSYVMLFLGAGLMSSLAIWA 389          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZIP12_ARATH (Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.790e-34
Identity = 71/132 (53.79%), Postives = 92/132 (69.70%), Query Frame = 2
Query:    2 SESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            S S  TIKPL+AA+TFHQ FEG GLGGCI++AKF+ + + ++ +FF+LT P         +  Y+EN P AL V G  NA A+GILIYM+LVDL+A  FMN K Q + ++Q    VSL++GAG MSLLA WA
Sbjct:  224 SPSVSTIKPLIAAITFHQLFEGFGLGGCISEAKFRVKKIWVMLMFFALTAPIGIGIGIGVAEIYNENSPMALKVSGFLNATASGILIYMALVDLVAPLFMNQKTQSSMKIQVACSVSLVVGAGLMSLLAIWA 355          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZIP10_ARATH (Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.809e-33
Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 2
Query:   17 TIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            TIK LVAAL FHQ FEGMGLGGCI QA++     A++A FF++TTP         S  Y EN P +LI  G+ NA++AG+LIYM+LVDLLAADFM  KMQ + +LQ  ++ ++LLGAG MS++AKWA
Sbjct:  238 TIKGLVAALCFHQMFEGMGLGGCILQAEYGWVKKAVMAFFFAVTTPFGVVLGMALSKTYKENSPESLITVGLLNASSAGLLIYMALVDLLAADFMGQKMQRSIKLQLKSYAAVLLGAGGMSVMAKWA 364          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.809e-33
Identity = 68/127 (53.54%), Postives = 91/127 (71.65%), Query Frame = 2
Query:   17 TIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            TIK L+AAL FHQ FEGMGLGGCI QA++ +    ++A FF++TTP         S+ Y +N P ALI  G+ NA +AG+LIYM+LVDLLAA+FM PK+Q + ++QF   ++ LLG G MS++AKWA
Sbjct:  213 TIKGLIAALCFHQMFEGMGLGGCILQAEYTNMKKFVMAFFFAVTTPFGIALGIALSTVYQDNSPKALITVGLLNACSAGLLIYMALVDLLAAEFMGPKLQGSIKMQFKCLIAALLGCGGMSIIAKWA 339          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZIP8_ARATH (Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.818e-32
Identity = 69/127 (54.33%), Postives = 88/127 (69.29%), Query Frame = 2
Query:   17 TIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            TIK L+AAL FHQ FEGMGLGGCI QA++ +    ++A FF++TTP         SS Y +N PTALI  G+ NA +AG+LIYM+LVDLLAA+FM   +Q + +LQ     + LLG G MS+LAKWA
Sbjct:  221 TIKGLIAALCFHQMFEGMGLGGCILQAEYTNVKKFVMAFFFAVTTPSGIALGIALSSVYKDNSPTALITVGLLNACSAGLLIYMALVDLLAAEFMGSMLQRSVKLQLNCFGAALLGCGGMSVLAKWA 347          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZIP9_ARATH (Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.771e-31
Identity = 65/132 (49.24%), Postives = 91/132 (68.94%), Query Frame = 2
Query:    2 SESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            S SP TI+PL+ AL+FHQFFEG  LGGC+ +A+   RG A++A FF++TTP         +S Y+     AL+ EG+ ++ +AGIL+YM+LVDL+AADF++ KM  + R+Q  ++  L LGAG MS LA WA
Sbjct:  213 SHSPCTIRPLLLALSFHQFFEGFALGGCVAEARLTPRGSAMMAFFFAITTPIGVAVGTAIASSYNSYSVAALVAEGVLDSLSAGILVYMALVDLIAADFLSKKMSVDFRVQVVSYCFLFLGAGMMSALAIWA 344          
The following BLAST results are available for this feature:
BLAST of CX308557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ZIP5_ARATH9.568e-4364.39Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5... [more]
ZIP3_ARATH8.955e-4162.88Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3... [more]
ZIP1_ARATH1.133e-3558.21Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1... [more]
ZIP4_ARATH2.524e-3553.79Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
IRT3_ARATH1.253e-3453.79Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]
ZIP12_ARATH2.790e-3453.79Probable zinc transporter 12 OS=Arabidopsis thalia... [more]
ZIP10_ARATH1.809e-3356.69Probable zinc transporter 10 OS=Arabidopsis thalia... [more]
IRT1_ARATH1.809e-3353.54Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
ZIP8_ARATH5.818e-3254.33Probable zinc transporter 8 OS=Arabidopsis thalian... [more]
ZIP9_ARATH3.771e-3149.24Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9... [more]

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Properties
Property NameValue
Genbank descriptionC21001C08Rv AbsLeaSub1 Citrus clementina cDNA clone C21001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308557 ID=CX308557; Name=CX308557; organism=Citrus clementina; type=EST; length=461bp
TTCTGAGAGTCCAAAAACTATTAAGCCTTTGGTTGCAGCGTTGACTTTTC
ATCAATTCTTTGAAGGAATGGGTCTTGGTGGTTGCATTACGCAGGCAAAA
TTCAAGTCTCGAGGAGTCGCAATATTGGCCTTGTTCTTCTCTTTGACAAC
CCCAGCTGGGATAGCAATAGGCATTGGAATATCAAGTTTTTATGACGAAA
ATGACCCCACTGCTCTTATTGTTGAAGGGATATTCAACGCAGCAGCAGCT
GGAATCCTAATATACATGTCCTTGGTTGATCTTCTTGCTGCAGATTTTAT
GAATCCGAAGATGCAAGACAATAAAAGGCTTCAATTTGGAGCACATGTTT
CTCTTCTTTTAGGAGCTGGTTGCATGTCCTTGTTAGCCAAATGGGCTTAA
AAATCATAGAGATTTTTTCGGCAATTTTTGTTTATCCAATAGTTTAATTT
GCGGCAGTTTT
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