CX308578

Overview
NameCX308578
Unique NameCX308578
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308578 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 7.819e-53
Identity = 100/114 (87.72%), Postives = 108/114 (94.74%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNLSAV 342
            KDYQSDHKF+ITTYSPTGV ITSSG+KKG+LFLADVNTQLKNKN+TTD+KVDT SNLFTTITVDE APGLKTILSF+VPDQRSGK+E+QYLHDYAGI TSVGLTANPIVN S V
Sbjct:   21 KDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGV 134          
BLAST of CX308578 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 1.630e-50
Identity = 98/114 (85.96%), Postives = 106/114 (92.98%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNLSAV 342
            KDY SD KFTI+TYSPTGVAITSSGTKKGELFL DVNTQLKNKNITTD+KVDT SNLFTTITV+EPAPG+K ILSFKVP+Q SGKVELQYLH+YAGIS+SVGL ANPIVN S+V
Sbjct:   21 KDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSV 134          
BLAST of CX308578 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 3.075e-49
Identity = 93/114 (81.58%), Postives = 106/114 (92.98%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNLSAV 342
            +DY SDHKFT+TTYS TGVAIT+SG KKGELFLADV+TQLKNKNITTD+KVDT SN++TTITVDEPAPGLKTI SF VPDQ+SGKVELQYLH+YAGI+TS+GLTA+P+VN S V
Sbjct:   21 RDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGV 134          
BLAST of CX308578 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 5.812e-40
Identity = 74/114 (64.91%), Postives = 96/114 (84.21%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNLSAV 342
            +DYQ+DHKFT+TTY+  GVAIT++ TKK +L   ++ +Q+KNKNIT D+K ++ SN+ TT+TVDE  PGLK+ILSF VPDQRSGK ELQY HDYAG+S S+GLTA+P+VNLS+V
Sbjct:   20 RDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSV 133          
BLAST of CX308578 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 7.591e-40
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNLSAV 342
            +DYQ D KF++TTYS TGVAIT++GT KG LFL DV TQ+KN N T D+KV T S+L TT+T DEPAPGLK I+  K+PD +SGK E+QY HDYAGISTSVG TA PIVN S V
Sbjct:   21 RDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGV 134          
BLAST of CX308578 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.914e-40
Identity = 76/113 (67.26%), Postives = 97/113 (85.84%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNLS 336
            +DYQ+DHKFT+TTY+  G AIT++ TKK +L + ++ +Q+KNKNIT D+K ++ASN+ TTIT D+  APGLKTILSF VPDQ+SGKVELQYLHDYAGI+ S+GLTANP+VNLS
Sbjct:   20 RDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLS 132          
BLAST of CX308578 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 1.295e-39
Identity = 81/114 (71.05%), Postives = 91/114 (79.82%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNLSAV 342
            KD+ SD KF+ITT+SP GVAITS+GTKKG+L L DV  Q + KNITTDLKV T S    T TVDE APGL++I SFKVPDQ SGKVELQYLH+YAGISTS+GLT NP VN S V
Sbjct:   21 KDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGV 134          
BLAST of CX308578 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.269e-33
Identity = 66/113 (58.41%), Postives = 89/113 (78.76%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNLS 336
            KDY +  KF +TT SP GVAIT++GT+K E    +++TQ+KNK +T D+K ++ S+L TTITVDE   PGLK+I++  VPDQRSGK+E QYLH+YAG++ SVGL +NP+VNLS
Sbjct:   21 KDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLS 133          
The following BLAST results are available for this feature:
BLAST of CX308578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC1_SOLTU7.819e-5387.72Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA1.630e-5085.96Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC2_SOLTU3.075e-4981.58Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_ORYSJ5.812e-4064.91Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC2_ARATH7.591e-4067.54Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_WHEAT9.914e-4067.26Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC1_ARATH1.295e-3971.05Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC_MAIZE5.269e-3358.41Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionC21001E05Rv AbsLeaSub1 Citrus clementina cDNA clone C21001E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308578 ID=CX308578; Name=CX308578; organism=Citrus clementina; type=EST; length=344bp
AAGGATTATCAGAGCGACCACAAGTTCACTATCACTACCTACTCTCCGAC
TGGAGTTGCTATTACATCATCTGGAACGAAAAAGGGTGAGCTGTTTCTAG
CTGATGTTAATACCCAGCTGAAGAACAAGAATATCACAACTGATCTCAAA
GTGGACACTGCCTCCAATCTTTTCACAACTATCACTGTTGATGAACCTGC
TCCTGGGCTGAAAACGATCCTAAGCTTCAAAGTTCCAGATCAAAGGTCTG
GCAAGGTTGAACTCCAGTATTTGCATGATTATGCGGGGATAAGCACAAGT
GTCGGCTTAACAGCGAATCCTATTGTTAACCTCTCGGCTGTGAT
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