CX308598

Overview
NameCX308598
Unique NameCX308598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig947 contig Ccv1_Contig947:1..431. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308598 vs. ExPASy Swiss-Prot
Match: SLSG3_BRAOL (S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.324e-34
Identity = 72/137 (52.55%), Postives = 105/137 (76.64%), Query Frame = 3
Query:   15 TVLWVANRNSPISDHNAVLTIGNNGNLVLLNQTNGTIWSTNVS-SQVKNPVV-RLLDNGNLVIKDNSSSHTTESYLWQSFDYLTDTLLPDMKLGWDLKTGLKRYLSSWESADDPSPGKFTYGLDIQVSPKLCTFNGS 419
            T +WVANR++P+S+    L I  N NLVLL+ +N ++WSTNV+    ++PVV  LLDNGN V++D++S++ ++ +LWQSFDY TDTLLP+MKLG+DLKTGL R+L+SW S+DDPS G ++Y L+++  P+    +GS
Sbjct:   82 TYVWVANRDNPLSNDIGTLKISGN-NLVLLDHSNKSVWSTNVTRGNERSPVVAELLDNGNFVMRDSNSNNASQ-FLWQSFDYPTDTLLPEMKLGYDLKTGLNRFLTSWRSSDDPSSGDYSYKLELRRLPEFYLSSGS 216          
BLAST of CX308598 vs. ExPASy Swiss-Prot
Match: SLSG6_BRAOL (S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.153e-33
Identity = 73/136 (53.68%), Postives = 100/136 (73.53%), Query Frame = 3
Query:   15 TVLWVANRNSPISDHNAVLTIGNNGNLVLLNQTNGTIWSTNVS-SQVKNPVV-RLLDNGNLVIKDNSSSHTTESYLWQSFDYLTDTLLPDMKLGWDLKTGLKRYLSSWESADDPSPGKFTYGLDIQVSPKLCTFNG 416
            T +WVANR++P+S+    L I  N NLVLL  TN ++WSTN++    + PVV  LL NGN V++D+S++  +E YLWQSFDY TDTLLP+MKLG+DLKTGL R+L+SW S+DDPS G F+Y L+ +  P+   ++G
Sbjct:   82 TYVWVANRDNPLSNAIGTLKISGN-NLVLLGHTNKSVWSTNLTRGNERLPVVAELLSNGNFVMRDSSNNDASE-YLWQSFDYPTDTLLPEMKLGYDLKTGLNRFLTSWRSSDDPSSGDFSYKLETRSLPEFYLWHG 215          
BLAST of CX308598 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.846e-32
Identity = 72/135 (53.33%), Postives = 100/135 (74.07%), Query Frame = 3
Query:    3 KIPD-TVLWVANRNSPISDHNAVLTIGNNGNLVLLNQTNGTIWSTNVS-SQVKNPVV-RLLDNGNLVIKDNSSSHTTESYLWQSFDYLTDTLLPDMKLGWDLKTGLKRYLSSWESADDPSPGKFTYGLDIQVSPK 398
            K+ D T +WVANR++P+S+    L I  N NLVLL+ +N  +W TN++    ++PVV  LL NGN V++D+S++  +E YLWQSFDY TDTLLP+MKLG++LKTGL R+L+SW S+DDPS G F+Y L+ Q  P+
Sbjct:   76 KVSDRTYVWVANRDNPLSNAIGTLKISGN-NLVLLDHSNKPVWWTNLTRGNERSPVVAELLANGNFVMRDSSNNDASE-YLWQSFDYPTDTLLPEMKLGYNLKTGLNRFLTSWRSSDDPSSGNFSYKLETQSLPE 208          
BLAST of CX308598 vs. ExPASy Swiss-Prot
Match: SLSG2_BRAOA (S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.659e-30
Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = 3
Query:   15 TVLWVANRNSPISDHNAVLTIGNNGNLVLLNQTNGTIWSTN-VSSQVKNPVV-RLLDNGNLVIKDNSSSHTTESYLWQSFDYLTDTLLPDMKLGWDLKTGLKRYLSSWESADDPSPGKFTYGLDIQVSPKLCTF 410
            T +WVANR++P+S     L I N  NLVLL+ +N ++WSTN      ++PVV  LL NGN V++D S+ +    +LWQSFDY TDTLLP+MKLG+DL+TGL R+L+SW S+DDPS G F+Y L  +  P+   F
Sbjct:   81 TYVWVANRDNPLSCSIGTLKISNM-NLVLLDHSNKSLWSTNHTRGNERSPVVAELLANGNFVLRD-SNKNDRSGFLWQSFDYPTDTLLPEMKLGYDLRTGLNRFLTSWRSSDDPSSGDFSYKLQTRRLPEFYLF 212          
BLAST of CX308598 vs. ExPASy Swiss-Prot
Match: SLSG4_BRAOL (S-locus-specific glycoprotein S14 (Fragment) OS=Brassica oleracea GN=SLSG PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.329e-26
Identity = 65/141 (46.10%), Postives = 96/141 (68.09%), Query Frame = 3
Query:    3 KIPD-TVLWVANRNSPISDHNAVLTIGNNGNLVLLNQTNGTIWSTNVS-SQVKNPVVR-LLDNGNLVIKDNSSSHTTESYLWQSFDYLTDTLLPDMKLGWDLKTGLKRYLSSWESADDPSPGKFTYGLDIQVSPKLCTFNG 416
            K+ D T +WVANR++P+S     L I  N N   L+ +N ++WSTN++    ++PVV  +L NGN V++D S+++    +LWQSFD+ TDTLLP+MKL +DLKTGL R+L+S  S+DDPS G F+Y L+ +  P+    +G
Sbjct:   74 KVSDRTYVWVANRDNPLSSSIGTLKISGN-NPCHLDHSNKSVWSTNLTRGNERSPVVADVLANGNFVMRD-SNNNDASGFLWQSFDFPTDTLLPEMKLSYDLKTGLNRFLTSRRSSDDPSSGDFSYKLEPRRLPEFYLSSG 212          
BLAST of CX308598 vs. ExPASy Swiss-Prot
Match: SLSG0_BRAOA (S-locus-specific glycoprotein OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.255e-20
Identity = 53/126 (42.06%), Postives = 83/126 (65.87%), Query Frame = 3
Query:   15 TVLWVANRNSPISDHNAVLTIGNNGNLVLLNQTNGTIWSTNVSSQVKNPVV-RLLDNGNLVIKDNSSSHTTESYLWQSFDYLTDTLLPDMKLGWDL-KTGLKRYLSSWESADDPSPGKFTYGLDIQ 386
            T +WVANR++ + +    L I ++ +LVLL+ +N  +WSTN +     PV   LL NGN V++D S ++  + ++WQSFDY  DTLLP+MKLG +L  +  ++ L+SW+S  DPS G F++ L+ +
Sbjct:   86 TYVWVANRDNALHNSMGTLKI-SHASLVLLDHSNTPVWSTNFTGVAHLPVTAELLANGNFVLRD-SKTNDLDRFMWQSFDYPVDTLLPEMKLGRNLIGSENEKILTSWKSPTDPSSGDFSFILETE 209          
BLAST of CX308598 vs. ExPASy Swiss-Prot
Match: SLSG1_BRAOA (S-locus-specific glycoprotein BS29-1 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.557e-20
Identity = 51/126 (40.48%), Postives = 83/126 (65.87%), Query Frame = 3
Query:   15 TVLWVANRNSPISDHNAVLTIGNNGNLVLLNQTNGTIWSTNVSSQVKNPVV-RLLDNGNLVIKDNSSSHTTESYLWQSFDYLTDTLLPDMKLGWDLK-TGLKRYLSSWESADDPSPGKFTYGLDIQ 386
            T +WVANR++ + +    L I ++ +LVLL+ +N  +WSTN +     PV   LL NGN V++D+ ++   + ++WQSFDY  DTLLP+MKLG +   +G ++ L+SW+S  DPS G +++ L+ +
Sbjct:   86 TYVWVANRDNALHNSMGTLKI-SHASLVLLDHSNTPVWSTNFTGVAHLPVTAELLANGNFVLRDSKTT-ALDRFMWQSFDYPVDTLLPEMKLGRNRNGSGNEKILTSWKSPTDPSSGDYSFILETE 209          
BLAST of CX308598 vs. ExPASy Swiss-Prot
Match: EP1G_DAUCA (Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-11
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 3
Query:   21 LWVANRNSPISDHNAVLTIGNNGNLVLLNQTNGTIWSTNVSSQVKNPV-VRLLDNGNLVIKDNSSSHTTESYLWQSFDYLTDTLLPDMKLGWDLKTGLKRYLSSWESADDP 350
            +W ANR +P+ D NA LT G +GNLVL        W T+ ++  K  V +++L NGN+V+ D+        +LWQSFD  TDTLL    L     T L    S  E+ + P
Sbjct:   91 VWEANRGNPV-DENATLTFGPDGNLVLARSNGQVAWQTSTAN--KGVVGLKILPNGNMVLYDSKG-----KFLWQSFDTPTDTLLVGQSLKMGAVTKLVSRASPGENVNGP 193          
The following BLAST results are available for this feature:
BLAST of CX308598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SLSG3_BRAOL2.324e-3452.55S-locus-specific glycoprotein S13 OS=Brassica oler... [more]
SLSG6_BRAOL1.153e-3353.68S-locus-specific glycoprotein S6 OS=Brassica olera... [more]
SRK6_BRAOE4.846e-3253.33Putative serine/threonine-protein kinase receptor ... [more]
SLSG2_BRAOA2.659e-3051.49S-locus-specific glycoprotein BS29-2 OS=Brassica o... [more]
SLSG4_BRAOL2.329e-2646.10S-locus-specific glycoprotein S14 (Fragment) OS=Br... [more]
SLSG0_BRAOA4.255e-2042.06S-locus-specific glycoprotein OS=Brassica oleracea... [more]
SLSG1_BRAOA5.557e-2040.48S-locus-specific glycoprotein BS29-1 OS=Brassica o... [more]
EP1G_DAUCA1.621e-1138.74Epidermis-specific secreted glycoprotein EP1 OS=Da... [more]
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Properties
Property NameValue
Genbank descriptionC21001G01Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308598 ID=CX308598; Name=CX308598; organism=Citrus clementina; type=EST; length=431bp
AGAAGATCCCTGATACGGTTTTATGGGTTGCCAATAGAAATAGTCCTATC
TCCGATCATAACGCAGTATTAACCATTGGCAACAATGGAAATCTCGTTCT
TCTCAACCAAACAAACGGCACTATCTGGTCTACAAACGTATCTAGCCAAG
TGAAAAATCCAGTGGTGAGACTCTTAGATAATGGAAACCTCGTTATTAAG
GATAACTCCAGCAGTCATACTACTGAAAGCTACTTGTGGCAGAGCTTCGA
CTACTTAACAGACACTCTGTTACCAGACATGAAGTTGGGCTGGGACTTGA
AGACTGGTCTGAAACGATATTTATCATCATGGGAAAGTGCTGACGATCCA
TCCCCTGGGAAGTTTACCTACGGACTTGACATTCAGGTGTCGCCTAAATT
ATGCACGTTCAATGGTTCTGCAAAATATACC
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