CX308603

Overview
NameCX308603
Unique NameCX308603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:429..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 6.027e-69
Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVTDDGKEKKVTIDFEPF+PINASLYLCDNKFHT+ LNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL
Sbjct:   96 GTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEPLNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 224
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 7.871e-69
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIV DDGKEKKVT DFEPFRPINASLYLCDNKFHT+ALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL
Sbjct:   95 GTIVNDDGKEKKVTFDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 223
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 7.871e-69
Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIV +DGKEKKVTIDFEPFRPINASLYLCDNKFHT+ALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQ+YINPATSQPNVSGL
Sbjct:   97 GTIVNEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGL 225
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 7.641e-56
Identity = 103/129 (79.84%), Postives = 114/129 (88.37%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D+KFGFIVMDGNG LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE+ATQ +I     +PN++GL
Sbjct:   98 GTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATQLFI--TNDKPNIAGL 224
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.980e-56
Identity = 104/129 (80.62%), Postives = 112/129 (86.82%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVTD+GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D+KFGFIVMDGNG LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q +I     +PNV+GL
Sbjct:   98 GTIVTDEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--TNDRPNVTGL 224
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.220e-53
Identity = 101/129 (78.29%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GT+VTD+GKEK V ID EPF+PIN SLYLCDNKFHT  L ELLESD+KFGFIV+DGNG LFG L G+TR VLHK +VDLPKKHGRGGQSALRFARLRMEKRHNYVRK +ELATQFY+     +PNVSGL
Sbjct:  100 GTMVTDEGKEKPVRIDIEPFKPINTSLYLCDNKFHTAPLGELLESDEKFGFIVVDGNGALFGLLCGSTRTVLHKITVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVSELATQFYV--TNDKPNVSGL 226
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.055e-53
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q +I  +  + NV+GL
Sbjct:   98 GTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGL 224
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_XENLA (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.055e-53
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q +I  +  + NV+GL
Sbjct:   98 GTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGL 224
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 6.055e-53
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q +I  +  + NV+GL
Sbjct:   98 GTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGL 224
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 6.055e-53
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q +I  +  + NV+GL
Sbjct:   98 GTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGL 224
The following BLAST results are available for this feature:
BLAST of CX308603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ERF1Z_ARATH6.027e-6996.90Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH7.871e-6996.90Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH7.871e-6996.90Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_DROME7.641e-5679.84Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_POLMI9.980e-5680.62Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI1.220e-5378.29Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR6.055e-5377.52Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENLA6.055e-5377.52Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT6.055e-5377.52Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT6.055e-5377.52Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC21001G06Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308603 ID=CX308603; Name=CX308603; organism=Citrus clementina; type=EST; length=389bp
TAGTCCCGAAACATTAGGCTGGCTAGTGGCAGGATTGATATAAAACTGTG
TGGCAAGTTCAGCTGTTTTCCTCACATAGTTATGGCGCTTCTCCATTCGA
AGTCGGGCAAACCGAAGGGCTGACTGTCCACCTCTTCCATGTTTCTTTGG
AAGGTCAACACTGAACTTGTGAAGCACCTCACGGGTGTTACCACTTAGAG
TCCCAAAAAGGGTTCCATTACCATCCATGACAATAAAACCAAACTTGTCA
TCAGACTCCAACAGTTCATTCAGAGCGTCAGTGTGAAACTTATTGTCACA
GAGGTAAAGAGATGCATTAATAGGCCTGAAAGGCTCGAAGTCAATTGTAA
CCTTCTTTTCCTTCCCATCATCAGTAACAATTGTTCCCG
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