CX308640

Overview
NameCX308640
Unique NameCX308640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308640 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 81.6481 bits (200), Expect = 1.485e-15
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   55 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-------VGLVTSCHQTAAILLLEA 435
            S Y ++  T+ AE PGL+   L+++  GRK +M + +    IF   L        +T L+  AR F  G F  A ++ PE+YPT++R+ G G   A+ RIG +V P +A       + L    + TAAIL L A
Sbjct:  370 SDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIAQVASEKSLSLPIGIYGTAAILGLIA 503          
BLAST of CX308640 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.320e-15
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 1
Query:   61 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAI 420
            Y ++  T+ +E PGLL    ++DRVGRK +M I FI      L L       +LT  L  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T  +
Sbjct:  373 YTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSIYLTVLV 493          
BLAST of CX308640 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.320e-15
Identity = 43/121 (35.54%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   61 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAI 420
            Y+++  T+ +E PG+L    ++DR+GRK +M + FI   +  L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T A+
Sbjct:  373 YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAV 493          
BLAST of CX308640 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.643e-15
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   61 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAI 420
            Y+++  T+ +E PG+L    ++DR+GRK +M + F+   +  L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T A+
Sbjct:  373 YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAV 493          
BLAST of CX308640 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.643e-15
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   61 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAI 420
            Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T A+
Sbjct:  373 YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAV 493          
BLAST of CX308640 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.643e-15
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   61 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAI 420
            Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T A+
Sbjct:  373 YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAV 493          
BLAST of CX308640 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.643e-15
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   61 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAI 420
            Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T A+
Sbjct:  373 YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAV 493          
BLAST of CX308640 vs. ExPASy Swiss-Prot
Match: YCEI_BACSU (Putative metabolite transport protein yceI OS=Bacillus subtilis GN=yceI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 45/137 (32.85%), Postives = 77/137 (56.20%), Query Frame = 1
Query:   22 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-NILLTA--LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAIL 423
            S++L +       +  V + + A+LPG  +AA L+++ GRK  + +  I          T  S ++LLTA  LLS    F++G + +   + PE YPT++R+TG+G   A GRIGG+  PL+ VG + + H + +++
Sbjct:  240 SVMLLKGFSMIQSFEYVLLMTLAQLPGYFSAAWLIEKAGRKWILVVYLIGTAGSAYFFGTADSLSLLLTAGVLLS---FFNLGAWGVLYAYTPEQYPTAIRATGSGTTAAFGRIGGIFGPLL-VGTLAARHISFSVI 372          
BLAST of CX308640 vs. ExPASy Swiss-Prot
Match: S22A7_BOVIN (Solute carrier family 22 member 7 OS=Bos taurus GN=SLC22A7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   55 SVYINVFITSFAELPGLLTAALLVDRVGRKLSM--TIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAV 384
            +VY+   +    ELP  L   L V   GR+L+M  T++   + + L  LV+ +     TAL    + FS   F  A +F  E+YPT +R TG G+   VGR+GG + PL A+
Sbjct:  373 NVYLTQLVFGAVELPSKLLVYLSVRHAGRRLTMAGTLLGAALAVGLRILVSPEMKSWSTALAVMGKAFSEAAFTTAYLFTSELYPTVLRQTGMGLTALVGRLGGSLAPLAAL 484          
The following BLAST results are available for this feature:
BLAST of CX308640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
YOU1_CAEEL1.485e-1535.07Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
SVOP_XENLA4.320e-1536.36Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
SVOP_MOUSE4.320e-1535.54Synaptic vesicle 2-related protein OS=Mus musculus... [more]
SVOP_RAT5.643e-1534.71Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOP_PONAB5.643e-1534.71Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN5.643e-1534.71Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_BOVIN5.643e-1534.71Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
YCEI_BACSU2.898e-1132.85Putative metabolite transport protein yceI OS=Baci... [more]
S22A7_BOVIN2.898e-1135.71Solute carrier family 22 member 7 OS=Bos taurus GN... [more]
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Properties
Property NameValue
Genbank descriptionC21002C01Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308640 ID=CX308640; Name=CX308640; organism=Citrus clementina; type=EST; length=440bp
GCGGGAAGTAAATGTAGCTCAAGCATCTTGCTTTCAGAAAATGTGCAGGA
TGCTAGTGTCTACATAAATGTATTCATCACTAGCTTTGCAGAGCTACCTG
GACTTCTTACAGCTGCATTACTTGTGGACAGAGTGGGTCGCAAGCTTTCC
ATGACAATTATGTTTATCTTTGTATGTATTTTCCTGCTTCCACTGGTTAC
ACTTCAGTCCAACATTTTGCTAACAGCATTATTATCCGGAGCTCGCATGT
TCTCTATGGGAACCTTTATTATCGCCAACATTTTTGCCCCCGAGATATAT
CCAACTTCTATGAGATCAACTGGTGCTGGAGTTGCGTATGCTGTAGGAAG
GATTGGTGGTATGGTATGCCCTCTTGTAGCTGTTGGACTAGTGACTAGTT
GCCATCAAACAGCTGCAATACTTCTATTAGAGGCTCTTAT
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