CX308644

Overview
NameCX308644
Unique NameCX308644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.357e-22
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  174 KRSNVVSAS--GIPEYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            KRS+  S    G+  ++Y +L  AT NF  +T IGQG +G VYK  + +G  VA+K     S QGEKEF TE+ LL RLHHRNLV+L+G+C E+G+ MLVY +M  G+L
Sbjct:  598 KRSSKASLKIEGVKSFTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTL 706          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.702e-21
Identity = 54/118 (45.76%), Postives = 75/118 (63.56%), Query Frame = 3
Query:  168 GFKRSNVVSASGIPE-----YSYKDLQKATCNF--TTLIGQGAFGPVYKAQM-STGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            G KR  ++   G+ +     +++++L  AT NF   T +G+G FG VYK ++ STG+ VAVK L  +  QG +EF  EV++L  LHH NLVNL+GYCA+  Q +LVY FM  GSL  H
Sbjct:   54 GSKRELLLPRDGLGQIAAHTFAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDH 171          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.447e-21
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  189 VSASGIPEYSYKDLQKATCNFTTL--IGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++   +  Y++ +L  AT +F+ L  IG+G +G VYK  +  G  VAVK     S QG+KEF TE+ LL RLHHRNLV+L+GYC +KG+ MLVY +M  GSL
Sbjct:  611 MNMESVKGYNFTELDSATSSFSDLSQIGRGGYGKVYKGHLPGGLVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSL 712          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.405e-19
Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  177 RSNVVSASGIPEYSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            R+N+   +     +Y ++   T NF  +IG+G FG VY   ++  E VAVKVL+  S QG KEF+ EV LL R+HH NLV+LVGYC E+    L+Y +M+ G L SH
Sbjct:  551 RANLSLENKKRRITYSEILLMTNNFERVIGEGGFGVVYHGYLNDSEQVAVKVLSPSSSQGYKEFKAEVELLLRVHHINLVSLVGYCDEQAHLALIYEYMANGDLKSH 657          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.405e-19
Identity = 45/90 (50.00%), Postives = 61/90 (67.78%), Query Frame = 3
Query:  228 LQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            L++AT NF+  +G+G+FG VY  +M  G+ VAVK+ A  S    ++F TEV LL R+HHRNLV L+GYC E  + +LVY +M  GSL  H
Sbjct:  601 LEEATDNFSKKVGRGSFGSVYYGRMKDGKEVAVKITADPSSHLNRQFVTEVALLSRIHHRNLVPLIGYCEEADRRILVYEYMHNGSLGDH 690          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y4245_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20450 OS=Arabidopsis thaliana GN=At4g20450 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHM-LVYVFMSKGSLASH 497
            Y+Y+++   T NF   +G+G FG VY   ++  E VAVKVL+  S QG K+F+ EV LL R+HH NLV LVGYC ++GQH+ L+Y +MS G+L  H
Sbjct:  581 YTYEEVAVITNNFERPLGEGGFGVVYHGNVNDNEQVAVKVLSESSAQGYKQFKAEVDLLLRVHHINLVTLVGYC-DEGQHLVLIYEYMSNGNLKQH 675          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  153 SMWLEGFKRSNVVSASG-------IPEYSYKDLQKATCNFTTL--IGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLA 491
            ++W +G+ RS              I  +S + ++ AT NF +   IG+G FGPVYK ++  G  +AVK L+T SKQG +EF  E+ ++  LHH NLV L G C E GQ +LVY F+   SLA
Sbjct:  585 TLWKKGYLRSKSQMEKDFKSLELMIASFSLRQIKIATNNFDSANRIGEGGFGPVYKGKLFDGTIIAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLA 706          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: RLK7_ARATH (Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.104e-19
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            ++Y ++ + T NF  ++G+G FG VY   +   E VAVKVL+  S QG KEF+ EV LL R+HH NLV+LVGYC E     LVY F+  G L  H
Sbjct:  554 FTYSEVVQVTKNFQRVLGKGGFGMVYHGTVKGSEQVAVKVLSQSSTQGSKEFKAEVDLLLRVHHTNLVSLVGYCCEGDYLALVYEFLPNGDLKQH 648          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 9.104e-19
Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  150 KSMWLEGFKRSNVVSASGIPEYSYKD----------------LQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            KS+ LEGF ++  ++ + I     KD                +++AT  + TLIG+G FG VY+  +  G+ VAVKV ++ S QG +EF  E+ LL  + H NLV L+GYC E  Q +LVY FMS GSL
Sbjct:  549 KSITLEGFGKTYPMATNIIFSLPSKDDFFIKSVSVKPFTLEYIEQATEQYKTLIGEGGFGSVYRGTLDDGQEVAVKVRSSTSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSL 677          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: MEE39_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MEE39 OS=Arabidopsis thaliana GN=MEE39 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.104e-19
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            ++Y ++ + T N    +G+G FG VY   ++  E VAVK+L+  S QG KEF+ EV LL R+HH NLVNLVGYC E+    L+Y +MS G L  H
Sbjct:  556 FTYSEVMEMTKNLQRPLGEGGFGVVYHGDLNGSEQVAVKLLSQTSAQGYKEFKAEVELLLRVHHINLVNLVGYCDEQDHFALIYEYMSNGDLHQH 650          
The following BLAST results are available for this feature:
BLAST of CX308644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
Y1684_ARATH1.357e-2250.46Probable LRR receptor-like serine/threonine-protei... [more]
PBS1_ARATH5.702e-2145.76Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
Y5374_ARATH7.447e-2149.02Probable LRR receptor-like serine/threonine-protei... [more]
Y5169_ARATH1.405e-1945.79Probable LRR receptor-like serine/threonine-protei... [more]
Y1677_ARATH1.405e-1950.00Probable LRR receptor-like serine/threonine-protei... [more]
Y4245_ARATH5.337e-1950.00Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH5.337e-1941.80Probable LRR receptor-like serine/threonine-protei... [more]
RLK7_ARATH9.104e-1948.42Receptor-like protein kinase At5g59670 OS=Arabidop... [more]
NORK_MEDTR9.104e-1941.09Nodulation receptor kinase OS=Medicago truncatula ... [more]
MEE39_ARATH9.104e-1947.37Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC21002C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308644 ID=CX308644; Name=CX308644; organism=Citrus clementina; type=EST; length=498bp
ATAGGAAGCGATCCCAGATAGGGAATAGTAGTTCTAGGAGGGCGGCGACA
CTTCCTATTCGTGCAAACGGTGTTGATTCTTGTAGCATATTATCTGATTC
TACTGTTGGTCCGGAGTCACCTGTGAAATCTGGATGGAATGGCAATGGCA
AGTCCATGTGGCTTGAAGGTTTTAAAAGGAGCAATGTGGTGTCAGCATCT
GGAATACCCGAGTATTCTTACAAGGATTTGCAGAAAGCTACATGTAATTT
TACGACATTAATAGGACAAGGTGCATTTGGCCCAGTATACAAAGCTCAGA
TGTCAACTGGTGAAACTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAG
CAAGGGGAGAAGGAATTCCAAACAGAGGTCATGTTATTAGGACGATTGCA
TCATAGGAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAAC
ATATGCTTGTGTATGTCTTCATGAGTAAAGGCAGCCTGGCTTCTCATT
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