CX308667

Overview
NameCX308667
Unique NameCX308667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length364
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9548 contig Ccv1_Contig9548:468..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: UMPK_ARATH (Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.883e-40
Identity = 78/101 (77.23%), Postives = 89/101 (88.12%), Query Frame = 3
Query:    3 NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVFTPKDEKAAA 305
            NEENRAAFE VT+IEP+FVLFFDC EEEME+R+L RNQGREDDN+ETIRKRFKVFLESSLPV+ YYEAKGKVRKI+AA P   VF+ VKA+F+P+ EK  A
Sbjct:  102 NEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVKAIFSPEAEKVEA 202          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KAD_PRUAR (Adenylate kinase OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.555e-24
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 3
Query:    3 NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVFTP 284
            +EENR AFE     EP+ VLFFDC E+EM +R+LNRNQGR DDN++TI+KR ++F E + PV+ YY  +GK+ KI+A     E+F+ V+ +F P
Sbjct:  135 SEENRKAFEQTIGAEPDVVLFFDCPEQEMVKRVLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHKINAVGTVDEIFEKVRPIFAP 228          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KCY_XENLA (UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 3
Query:    3 NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVF 278
            NE+N   +E     K +  FVLFFDC  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE +GKVRK+DA+    EVF  V+ +F
Sbjct:   97 NEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKRGKVRKVDASKSVDEVFTKVQNIF 192          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KCY_BOVIN (UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   39 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVF 278
            K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKVRKIDA+    EVFD V  +F
Sbjct:  111 KADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSVDEVFDEVVKIF 192          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KCY_XENTR (UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.489e-14
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 3
Query:    3 NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVF 278
            NE+N   +E     K +  FVLFFDC  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+K+DA+    EVF  V+ +F
Sbjct:   97 NEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKTGKVKKVDASKSVDEVFTKVQDIF 192          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KCY_PIG (UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   39 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVF 278
            K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+    EVFD V  +F
Sbjct:  111 KADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIF 192          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KCY_HUMAN (UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   39 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVF 278
            K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+    EVFD V  +F
Sbjct:  111 KADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 192          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: UMPK_YEAST (Uridylate kinase OS=Saccharomyces cerevisiae GN=URA6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.458e-14
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   42 IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVK 269
            +E +F+LFFDC E+ M  R+L R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV ++       +V+  V+
Sbjct:  120 VESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQ 197          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KCY_MOUSE (UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.235e-13
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 3
Query:   39 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVF 278
            K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +LES+ P++  YE  GKV+KIDA+    EVF  V  +F
Sbjct:  111 KADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVDEVFGEVVKIF 192          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KCY_DANRE (UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.235e-13
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 3
Query:   39 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVFTPKD 290
            K + +FVLFFDCS E    R L R +  GR DDN E++ KR + +L+S+ P+++ YE +GKV++IDA+    EVF  VK +    D
Sbjct:  111 KADVKFVLFFDCSNEVCIDRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRIDASRSVDEVFADVKNILEKDD 196          
The following BLAST results are available for this feature:
BLAST of CX308667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UMPK_ARATH5.883e-4077.23Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 P... [more]
KAD_PRUAR1.555e-2452.13Adenylate kinase OS=Prunus armeniaca PE=2 SV=1[more]
KCY_XENLA5.015e-1542.71UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=... [more]
KCY_BOVIN1.906e-1447.56UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2[more]
KCY_XENTR2.489e-1441.67UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2... [more]
KCY_PIG4.245e-1446.34UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1[more]
KCY_HUMAN4.245e-1446.34UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3[more]
UMPK_YEAST9.458e-1443.59Uridylate kinase OS=Saccharomyces cerevisiae GN=UR... [more]
KCY_MOUSE1.235e-1346.34UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1[more]
KCY_DANRE1.235e-1344.19UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC21002E04Rv AbsLeaSub1 Citrus clementina cDNA clone C21002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308667 ID=CX308667; Name=CX308667; organism=Citrus clementina; type=EST; length=364bp
GGAACGAGGAAAATCGTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCA
GAATTCGTTCTGTTTTTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCAT
TTTGAATAGGAATCAGGGAAGAGAAGATGATAACGTTGAGACAATTAGGA
AGCGGTTTAAGGTTTTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTAT
GAAGCTAAGGGTAAAGTTCGGAAGATTGATGCTGCANAGCCTGCTGCAGA
GGTTTTTGATGCTGTTAAAGCTGTTTTTACCCCAAAAGATGAGAAGGCTG
CTGCTTAGGTCTTCTCTGTCCAGAGTATCAGATTTAATATCAAGGTGGTG
GTATTGTTGTTGGC
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