CX308679

Overview
NameCX308679
Unique NameCX308679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length230
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9935 contig Ccv1_Contig9935:129..358. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308679 vs. ExPASy Swiss-Prot
Match: PFD6_BOVIN (Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.324e-14
Identity = 36/73 (49.32%), Postives = 55/73 (75.34%), Query Frame = -3
Query:    7 QLGENELVLKELGLLNEGANVYKLIGPVLVEQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAI 225
            QL EN +V +EL LL+    V+KL+GPVLV+Q+L EA A V KR++YI+AE+KR ++ L+DLE++   ++E +
Sbjct:   36 QLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETL 108          
BLAST of CX308679 vs. ExPASy Swiss-Prot
Match: PFD6_MOUSE (Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.249e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = -3
Query:    7 QLGENELVLKELGLLNEGANVYKLIGPVLVEQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAI 225
            QL EN +V +EL LL+    V+KL+GPVLV+Q+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E +
Sbjct:   36 QLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETL 108          
BLAST of CX308679 vs. ExPASy Swiss-Prot
Match: PFD6_HUMAN (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.249e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = -3
Query:    7 QLGENELVLKELGLLNEGANVYKLIGPVLVEQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAI 225
            QL EN +V +EL LL+    V+KL+GPVLV+Q+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E +
Sbjct:   36 QLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETL 108          
BLAST of CX308679 vs. ExPASy Swiss-Prot
Match: PFD6_CANFA (Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.249e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = -3
Query:    7 QLGENELVLKELGLLNEGANVYKLIGPVLVEQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAI 225
            QL EN +V +EL LL+    V+KL+GPVLV+Q+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E +
Sbjct:   36 QLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETL 108          
BLAST of CX308679 vs. ExPASy Swiss-Prot
Match: PFD6_DROME (Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.381e-12
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = -3
Query:    1 QLGENELVLKELGLLNEGANVYKLIGPVLVEQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFK 225
            QL EN+ VL EL LL     VYKL GPVLV+Q+L E+  NV KRIEYIS ELK     L+++E+     +E++ K
Sbjct:   39 QLNENKCVLDELNLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRESVAK 113          
BLAST of CX308679 vs. ExPASy Swiss-Prot
Match: PFD6_CAEBR (Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 31/74 (41.89%), Postives = 54/74 (72.97%), Query Frame = -3
Query:    7 IQLGENELVLKELGLLNEGANVYKLIGPVLVEQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAI 228
            ++L E++ V  EL L++  + VYKL+GPVLV QDL EA + V KR+E+I +E+KR++A++ D+ +K   +++ +
Sbjct:   33 MRLTESKNVKAELDLMDSDSKVYKLMGPVLVRQDLEEARSTVEKRLEFIESEIKRVEASITDVNKKSIEQRDKV 106          
BLAST of CX308679 vs. ExPASy Swiss-Prot
Match: PFD6_CAEEL (Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.580e-11
Identity = 31/74 (41.89%), Postives = 51/74 (68.92%), Query Frame = -3
Query:    7 IQLGENELVLKELGLLNEGANVYKLIGPVLVEQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAI 228
            ++L E++ V  EL L+   + VYKLIG VLV QDL EA + V KR+E+I +E KR++A++ D+ +K   +++ +
Sbjct:   33 MRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEARSTVEKRLEFIDSETKRVEASISDISKKCTEQRDKV 106          
The following BLAST results are available for this feature:
BLAST of CX308679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PFD6_BOVIN7.324e-1449.32Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV... [more]
PFD6_MOUSE1.249e-1349.32Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 ... [more]
PFD6_HUMAN1.249e-1349.32Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 ... [more]
PFD6_CANFA1.249e-1349.32Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 P... [more]
PFD6_DROME1.381e-1250.67Probable prefoldin subunit 6 OS=Drosophila melanog... [more]
PFD6_CAEBR1.169e-1141.89Probable prefoldin subunit 6 OS=Caenorhabditis bri... [more]
PFD6_CAEEL7.580e-1141.89Probable prefoldin subunit 6 OS=Caenorhabditis ele... [more]
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Properties
Property NameValue
Genbank descriptionC21002F04Rv AbsLeaSub1 Citrus clementina cDNA clone C21002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308679 ID=CX308679; Name=CX308679; organism=Citrus clementina; type=EST; length=230bp
TTTGAAGATCGCCTCCTTTTTGCTATTTTGTTTTTCTTCCAAATCCTGAA
GAGTTGCATCAAGTCGCTTCAACTCAGCAGAGATGTATTCAATTCTCTTG
CGCACATTGGCATTAGCCTCTGCCAAATCTTGCTCCACAAGAACTGGACC
AATCAATTTATAGACATTTGCTCCTTCATTTAACAAACCCAACTCCTTAA
GGACGAGCTCGTTTTCTCCAAGCTGAATAG
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