CX308682

Overview
NameCX308682
Unique NameCX308682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length273
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11517 contig Ccv1_Contig11517:814..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.516e-38
Identity = 74/90 (82.22%), Postives = 81/90 (90.00%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GGLDTEE YPYTGKDG CKFS++N+GVQV DSVNITLGAEDEL+HAVGLVRPVSVAFEVV  FRFYK GV++S  CGN PMDVNHAV+AV
Sbjct:  221 GGLDTEEAYPYTGKDGGCKFSAKNIGVQVRDSVNITLGAEDELKHAVGLVRPVSVAFEVVHEFRFYKKGVFTSNTCGNTPMDVNHAVLAV 310          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 6.098e-37
Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GGLDTE+ YPYTGKD  CKFS+ENVGVQVL+SVNITLGAEDEL+HAVGLVRPVS+AFEV+  FR YKSGVY+ + CG+ PMDVNHAV+AV
Sbjct:  221 GGLDTEKAYPYTGKDETCKFSAENVGVQVLNSVNITLGAEDELKHAVGLVRPVSIAFEVIHSFRLYKSGVYTDSHCGSTPMDVNHAVLAV 310          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.742e-36
Identity = 71/90 (78.89%), Postives = 79/90 (87.78%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GGLDTEE YPY G +G+CKF +ENVGV+VLDSVNITLGAEDEL+ AVGLVRPVSVAFEV+ GFR YKSGVY+S  CG  PMDVNHAV+AV
Sbjct:  223 GGLDTEESYPYQGVNGICKFKNENVGVKVLDSVNITLGAEDELKDAVGLVRPVSVAFEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAV 312          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.806e-36
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GGLDTEE YPYTG +G+C +  ENVGV+VLDSVNITLGAEDEL++AVGLVRPVSVAF+V++GFR YKSGVY+S  CG +PMDVNHAV+AV
Sbjct:  225 GGLDTEEAYPYTGVNGICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVRPVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAV 314          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.562e-35
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GGLDTEE YPYTGK+G+CKFS  N+GV+V+ SVNITLGAE EL++AV LVRPVSVAFEVV GF+ YKSGVY+ST+CG+ PMDVNHAV+AV
Sbjct:  219 GGLDTEEAYPYTGKNGICKFSQANIGVKVISSVNITLGAEYELKYAVALVRPVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAV 308          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.113e-33
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GG+DTEE YPY G +GVC + +EN  VQVLDSVNITL AEDEL++AVGLVRPVSVAF+V+DGFR YKSGVY+S  CG  P DVNHAV+AV
Sbjct:  224 GGIDTEESYPYKGVNGVCHYKAENAAVQVLDSVNITLNAEDELKNAVGLVRPVSVAFQVIDGFRQYKSGVYTSDHCGTTPDDVNHAVLAV 313          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.846e-18
Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            G+  E+ YPY GK+G CKF+ E     V + VNITL  E  +  AV L  PVS AFEV + F  YKSGVYSS  C   P  VNHAV+AV
Sbjct:  196 GIMGEDSYPYIGKNGQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAV 284          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 45/89 (50.56%), Postives = 54/89 (60.67%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            G+  E+ YPY GKD  C+F+ +     V + VNITL  E  +  AV L  PVS AFEV + F  YKSGVYSS  C   P  VNHAV+AV
Sbjct:  196 GIMEEDSYPYIGKDSSCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAV 284          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 44/89 (49.44%), Postives = 53/89 (59.55%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            G+  E+ YPY GKDG CKF        V D  NIT+  E+ +  AV L  PVS AFEV   F  Y++G+YSST C   P  VNHAV+AV
Sbjct:  198 GIMGEDTYPYQGKDGYCKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVNHAVLAV 286          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.010e-17
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            G+  E+ YPY G+D  CKF  +     V D  NIT+  E+ +  AV L  PVS AFEV + F  Y+ G+YSST C   P  VNHAV+AV
Sbjct:  198 GIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAV 286          
The following BLAST results are available for this feature:
BLAST of CX308682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ALEUL_ARATH5.516e-3882.22Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
ALEU_ARATH6.098e-3778.89Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CYSP2_MAIZE6.742e-3678.89Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
ORYC_ORYSJ8.806e-3676.67Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP3_SOLLC2.562e-3576.67Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
ALEU_HORVU9.113e-3373.33Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATH_RAT2.846e-1852.81Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_MOUSE2.409e-1750.56Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATH_HUMAN2.409e-1749.44Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CATH_PIG7.010e-1747.19Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC21002F07Rv AbsLeaSub1 Citrus clementina cDNA clone C21002F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308682 ID=CX308682; Name=CX308682; organism=Citrus clementina; type=EST; length=273bp
CAACAGCAACGACAGCATGGTTCACATCCATGGGATTATTTCCACATTTA
GTGCTGCTGTAAACTCCACTCTTGTAAAATCGGAATCCATCTACTACTTC
AAATGCCACACTCACAGGTCGAACAAGACCAACTGCATGCTGTAATTCAT
CTTCAGCACCCAAGGTAATGTTGACTGAGTCCAGGACTTGGACGCCAACA
TTTTCAGATGAGAATTTGCAGACACCATCTTTTCCGGTGTAGGGATATAC
TTCCTCAGTATCAAGGCCACCAT
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