CX308694

Overview
NameCX308694
Unique NameCX308694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14416 contig Ccv1_Contig14416:582..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.035e-20
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W SPVAW LYG++T QVGD +++V I     M++K  +K+ + +   FLPVVAVVH+AWI +FLF FAY IK +NFQRR
Sbjct: 1375 WASPVAWTLYGIITSQVGDRDSIVHITGVGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.307e-20
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W +PVAW LYGL+T QVGD +++V I     + +K  +K+ + ++  FLPVVAVVH+AWI +FLFVFAY IK +NFQRR
Sbjct: 1376 WATPVAWTLYGLITSQVGDKDSMVHISGIGDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.502e-16
Identity = 35/80 (43.75%), Postives = 57/80 (71.25%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGT-SMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W+ PVAW +YGL+  Q GD+ET +Q+  G   +TVKQ+++D+Y +++ F+  VA V +A+   F F+FA+ I+++NFQ R
Sbjct: 1390 WICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 35/80 (43.75%), Postives = 55/80 (68.75%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGT-SMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W+ PVAW +YGL+T Q GD+ET + +  G   +TVKQ++KD Y +++ ++  VA V + +   F F+FA+ IK++NFQ R
Sbjct: 1363 WICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.501e-15
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W+ PVAW LYGLV  Q GDI+ +++   G + TV QFV D + +  +FL VVAVVH+ +   F F+F++AI   NFQRR
Sbjct: 1375 WICPVAWTLYGLVASQFGDIQHVLE---GDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.501e-15
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            WL PVAW +YGL+  Q GD+E  + +P  +   V+ F+KD + Y   F+ VVA V   +   F F +AY+I+++NFQ+R
Sbjct: 1431 WLCPVAWTVYGLIVSQYGDVEDFITVPGQSDQQVRPFIKDYFGYDPDFMGVVAAVLAGFTVFFAFTYAYSIRTLNFQQR 1509          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W +PVAW LYGLV  Q GDI+T +      + TV+QF++  + +K  FL VVA V  A++ +F F FA+AIK+ NFQRR
Sbjct: 1360 WANPVAWTLYGLVASQFGDIQTKLS----DNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.503e-14
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W+ PVAW LYGLV  Q GDI T   + DGT   VK FV++ +D+K S+L VVAVV +A+  +F F+F +AI  +NFQ+R
Sbjct: 1390 WICPVAWTLYGLVASQFGDIMT--PMDDGTP--VKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.503e-14
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            WL P+AW +YGL+  Q GD+E ++ +P  ++ T+  +V  ++ Y   F+PVVA V + +   F F++A  IK +NFQ R
Sbjct: 1422 WLCPLAWTVYGLIVTQYGDLEQIISVPGQSNQTISYYVTHHFGYHRKFMPVVAPVLVLFAVFFAFMYAICIKKLNFQHR 1500          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.387e-14
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIP-DGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W +PV+W +YG++  Q  D + +V +P   T+M VK F++ N  +K  FL  V + H  ++ +F F+F Y IK +NFQ+R
Sbjct: 1375 WANPVSWTIYGVIASQFADSDRVVTVPGQSTTMVVKDFLEKNMGFKHDFLGYVVLAHFGYVIIFFFLFGYGIKCLNFQKR 1454          
The following BLAST results are available for this feature:
BLAST of CX308694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AB34G_ARATH1.035e-2055.70ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH2.307e-2055.70ABC transporter G family member 39 OS=Arabidopsis ... [more]
AB36G_ARATH4.502e-1643.75ABC transporter G family member 36 OS=Arabidopsis ... [more]
AB35G_ARATH2.918e-1543.75ABC transporter G family member 35 OS=Arabidopsis ... [more]
PDR4_ORYSJ6.501e-1549.37Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR15_ORYSJ6.501e-1541.77Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
PDR1_TOBAC1.891e-1449.37Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR2_ORYSJ5.503e-1451.90Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR12_ORYSJ5.503e-1439.24Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
PDR5_ORYSJ9.387e-1438.75Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC21002G08Rv AbsLeaSub1 Citrus clementina cDNA clone C21002G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308694 ID=CX308694; Name=CX308694; organism=Citrus clementina; type=EST; length=420bp
TTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAATTAAACTGCTTTATTCA
TTTAATTTCCATAAAAGAATACATTGGATTCCATATCACAATTTCTACTT
AAAAGTCCAAGTAACAAGCAAAATTGAAAGATTACAATTCTAAGAATAGG
TAGCATTCTAAAGATTTGAGCTACAGGTTTATCTCCTTTGGAAGTTGATG
GATTTGATGGCATAGGCAAACACAAATAAGAAGACGCCAATCCAGGCAAG
ATGCACAACAGCGACCACAGGAAGGAAACTAGTCTTGTAATCGTAATTAT
CTTTGACAAATTGCTTCACTGTCATTGAAGTGCCATCAGGGATCTGCACC
AGTGTCTCTATGTCACCAACTTGACAAGTCACAAGGCCATACAGATTCCA
AGCCACCGGAGAAAGCCAGT
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