CX308698

Overview
NameCX308698
Unique NameCX308698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:257..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: HBL1_GOSHI (Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum GN=HB1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.668e-57
Identity = 110/124 (88.71%), Postives = 115/124 (92.74%), Query Frame = -2
Query:    1 EGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 372
            EG+ FTEEQEALVVKSW VMKK   ELGLKFFL+IFEIAPS +KLFSFLRDSNVPLEQN KLKPHAMSVFVMTCESAVQLRKAGKVTVRES LKKLGA HFKYGVV+EHFEVTKF+LLETIKEA
Sbjct:    5 EGKVFTEEQEALVVKSWTVMKKKTAELGLKFFLKIFEIAPSAKKLFSFLRDSNVPLEQNTKLKPHAMSVFVMTCESAVQLRKAGKVTVRESNLKKLGATHFKYGVVDEHFEVTKFALLETIKEA 128          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: HBP2_CASGL (Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.541e-55
Identity = 107/124 (86.29%), Postives = 116/124 (93.55%), Query Frame = -2
Query:    1 EGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 372
            EGR FTEEQEALVVKSW+ MK NAGELGLKFFL+IFEIAPS QKLFSFL+DSNVPLE+N KLK HAMSVF+MTCESAVQLRKAGKVTVRES+LKKLGA HFK+GV +EHFEVTKF+LLETIKEA
Sbjct:    5 EGRGFTEEQEALVVKSWSAMKPNAGELGLKFFLKIFEIAPSAQKLFSFLKDSNVPLERNPKLKSHAMSVFLMTCESAVQLRKAGKVTVRESSLKKLGASHFKHGVADEHFEVTKFALLETIKEA 128          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: HBL1_MEDSA (Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=MHB1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 9.990e-55
Identity = 105/122 (86.07%), Postives = 114/122 (93.44%), Query Frame = -2
Query:    1 RAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 366
            + FTEEQEALVVKSWN MKKN+ ELGLK FL+IFEIAPS QKLFSFL+DS VPLEQN KLKPHAMSVF+MTCESAVQLRK+GKVTVRES+LKKLGA HFKYGVV+EHFEVTKF+LLETIKEA
Sbjct:    7 KGFTEEQEALVVKSWNAMKKNSAELGLKLFLKIFEIAPSAQKLFSFLKDSKVPLEQNTKLKPHAMSVFLMTCESAVQLRKSGKVTVRESSLKKLGANHFKYGVVDEHFEVTKFALLETIKEA 128          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: HBL_TRETO (Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.303e-51
Identity = 101/129 (78.29%), Postives = 115/129 (89.15%), Query Frame = -2
Query:    1 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 387
            M++    + FTEEQEALVVKSW VMKKN+ ELGLKFFL+IFEIAPS + LFS+L+DS +PLEQN KLKPHAM+VFVMTCESAVQLRKAGKVTVRES LK+LGA+HFK GVVNEHFE T+F+LLETIKEA
Sbjct:    1 MSSSEVDKVFTEEQEALVVKSWAVMKKNSAELGLKFFLKIFEIAPSAKNLFSYLKDSPIPLEQNPKLKPHAMTVFVMTCESAVQLRKAGKVTVRESNLKRLGAIHFKNGVVNEHFE-TRFALLETIKEA 128          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: HBL1_ARATH (Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana GN=AHB1 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 6.701e-51
Identity = 99/126 (78.57%), Postives = 114/126 (90.48%), Query Frame = -2
Query:    1 NEGR-AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 375
            +EG+  FTEEQEALVVKSW+VMKKN+ ELGLK F++IFEIAP+T+K+FSFLRDS +P EQN KLKPHAMSVFVM CESAVQLRK GKVTVRE+TLK+LGA H KYGVV+EHFEV K++LLETIKEA
Sbjct:    3 SEGKIVFTEEQEALVVKSWSVMKKNSAELGLKLFIKIFEIAPTTKKMFSFLRDSPIPAEQNPKLKPHAMSVFVMCCESAVQLRKTGKVTVRETTLKRLGASHSKYGVVDEHFEVAKYALLETIKEA 128          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: HBPL_PARRI (Non-legume hemoglobin OS=Parasponia rigida PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 8.751e-51
Identity = 97/129 (75.19%), Postives = 114/129 (88.37%), Query Frame = -2
Query:    1 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 387
            M++    + FTEEQEALVVK+W VMKKN+ ELGL+FFL+IFEIAPS + LFS+L+DS VPLEQN KLKPHA +VFVMTCESAVQLRKAGK TV+ES LK++GA+HFK GVVNEHFEVT+F+LLETIKEA
Sbjct:    1 MSSSEVNKVFTEEQEALVVKAWAVMKKNSAELGLQFFLKIFEIAPSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIKEA 129          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: HBPL_PARAD (Non-legume hemoglobin OS=Parasponia andersonii PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 8.751e-51
Identity = 97/129 (75.19%), Postives = 114/129 (88.37%), Query Frame = -2
Query:    1 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 387
            M++    + FTEEQEALVVK+W VMKKN+ ELGL+FFL+IFEIAPS + LFS+L+DS VPLEQN KLKPHA +VFVMTCESAVQLRKAGK TV+ES LK++GA+HFK GVVNEHFEVT+F+LLETIKEA
Sbjct:    1 MSSSEVNKVFTEEQEALVVKAWAVMKKNSAELGLQFFLKIFEIAPSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIKEA 129          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: HBL_MAIZE (Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 2.018e-47
Identity = 93/131 (70.99%), Postives = 113/131 (86.26%), Query Frame = -2
Query:    1 SMANINEGRA-FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 390
            ++A  ++G   F EEQEALV+KSW VMKK+A  LGL+FFL++FEIAPS +++FSFLRDS+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVRE+TLK+LGA H +YGV + HFEVT F+LLETIKEA
Sbjct:    2 ALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAEQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEA 132          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: HBL_ZEAMP (Non-symbiotic hemoglobin OS=Zea mays subsp. parviglumis GN=HB PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.635e-47
Identity = 93/131 (70.99%), Postives = 113/131 (86.26%), Query Frame = -2
Query:    1 SMANINEGRA-FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 390
            ++A  ++G   F EEQEALV+KSW VMKK+A  LGL+FFL++FEIAPS +++FSFLRDS+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVRE+TLK+LGA H +YGV + HFEVT F+LLETIKEA
Sbjct:    2 ALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEA 132          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: HBL2_ORYSJ (Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. japonica GN=HB2 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 4.495e-47
Identity = 88/121 (72.73%), Postives = 110/121 (90.91%), Query Frame = -2
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            +F+EEQEALV+KSW +MKK++  +GL+FFL+IFE+APS  ++FSFLR+S+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVR++TLK+LGA HFKYGV + HFEVT+F+LLETIKEA
Sbjct:   16 SFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDAHFEVTRFALLETIKEA 136          
The following BLAST results are available for this feature:
BLAST of CX308698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBL1_GOSHI3.668e-5788.71Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum G... [more]
HBP2_CASGL1.541e-5586.29Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1[more]
HBL1_MEDSA9.990e-5586.07Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=M... [more]
HBL_TRETO2.303e-5178.29Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB... [more]
HBL1_ARATH6.701e-5178.57Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana... [more]
HBPL_PARRI8.751e-5175.19Non-legume hemoglobin OS=Parasponia rigida PE=1 SV... [more]
HBPL_PARAD8.751e-5175.19Non-legume hemoglobin OS=Parasponia andersonii PE=... [more]
HBL_MAIZE2.018e-4770.99Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV... [more]
HBL_ZEAMP2.635e-4770.99Non-symbiotic hemoglobin OS=Zea mays subsp. parvig... [more]
HBL2_ORYSJ4.495e-4772.73Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC21002G12Rv AbsLeaSub1 Citrus clementina cDNA clone C21002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308698 ID=CX308698; Name=CX308698; organism=Citrus clementina; type=EST; length=445bp
TGCCTCTTTTATGGTTTCCAGTAGTGAAAATTTTGTGACCTCAAAATGCT
CATTAACAACACCATATTTGAAGTGGACAGCTCCTAATTTTTTTAGAGTT
GATTCTCTTACTGTCACTTTGCCTGCTTTCCTCAGTTGCACTGCTGATTC
ACACGTCATAACAAAAACAGACATGGCGTGGGGCTTGAGCTTCTGGTTCT
GCTCTAGAGGCACATTTGAGTCTCTCAAGAATGAGAACAGCTTTTGGGTT
GATGGTGCAATCTCAAAGATCCTCAAGAAGAATTTAAGACCCAATTCTCC
AGCATTCTTCTTCATTACATTCCATGACTTGACAACTAAAGCTTCTTGCT
CTTCAGTAAAGGCTCTACCTTCGTTAATGTTGGCCATTGATTTCTTTTGG
ACACCTGAGGATTGAATGTGATACACAAAATGTTGTTGAATCCCG
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