CX308701

Overview
NameCX308701
Unique NameCX308701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15221 contig Ccv1_Contig15221:237..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308701 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.897e-23
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 2
Query:    5 IAGLGSPAYTVSKYGILGLVKCLSAELGQHGIRVNCVSPYGLATGMSMKG-GVDPALIESSMSRMGNLKGQ-FLKTVGIANAALYLASDESSYVSGQNLVVDGGFSVVN 325
            ++G  S AYT SK+ ++G  +  + ELG+HGIRVNCVSP G+AT ++    G+D   IE+ M+   NLKG   LK   IA AAL+LASD+  YVSGQNL VDGG SVVN
Sbjct:  158 VSGAASHAYTTSKHALVGFTENAAGELGRHGIRVNCVSPAGVATPLARAAMGMDDEAIEAIMANSANLKGAGALKADDIAAAALFLASDDGRYVSGQNLRVDGGLSVVN 266          
BLAST of CX308701 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.076e-21
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = 2
Query:    5 IAGLGSPAYTVSKYGILGLVKCLSAELGQHGIRVNCVSPYGLATGMSMKGGVDPALIESSM-------SRMGNLKGQFLKTVGIANAALYLASDESSYVSGQNLVVDGGFSVVN 325
            + G+G  +Y  SK+ +LGL + ++AELGQHGIRVNCVSPY +AT +++    +    E +        +   NLKG  L    +ANA L+LASD+S Y+SG NL++DGGF+  N
Sbjct:  165 VGGVGPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGFRNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTN 278          
BLAST of CX308701 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.786e-18
Identity = 54/128 (42.19%), Postives = 70/128 (54.69%), Query Frame = 2
Query:    5 IAGLGSPAYTVSKYGILGLVKCLSAELGQHGIRVNCVSPYGLATGM---SMKGGVDPAL-----------------------IESSMSRMGNLKGQFLKTVGIANAALYLASDESSYVSGQNLVVDGG 310
            + GLG  AYT SK+ I+GL K  + EL  HG+RVNCVSP+G+AT M   + + G D A                        +E  +  +  LKG  L+   IA A L+LASDE+ Y+SG NLVVDGG
Sbjct:  199 LGGLGPHAYTASKHAIVGLTKNAACELRAHGVRVNCVSPFGVATPMLINAWRQGHDDATADADRDLDLDLDVTVPSDQEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGG 326          
BLAST of CX308701 vs. ExPASy Swiss-Prot
Match: FABG_CHLTR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia trachomatis GN=fabG PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.761e-12
Identity = 51/114 (44.74%), Postives = 64/114 (56.14%), Query Frame = 2
Query:    5 IAGL-GSPA---YTVSKYGILGLVKCLSAELGQHGIRVNCVSPYGLATGMSMKGGVDPALIESSMSRMGN--LKGQFLKTVG----IANAALYLASDESSYVSGQNLVVDGGFS 316
            I GL GSP    Y  +K GI+G  K LS E+G   IRVNC++P          G +D  + +S    + N  LKG  L  VG    IA AAL+LASD SSY++GQ L VDGG +
Sbjct:  145 IVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAP----------GFIDTDMTKSLNDNLKNEWLKGVPLGRVGMPEEIAKAALFLASDGSSYITGQVLSVDGGMA 248          
BLAST of CX308701 vs. ExPASy Swiss-Prot
Match: FABG_CHLMU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia muridarum GN=fabG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.125e-12
Identity = 51/117 (43.59%), Postives = 66/117 (56.41%), Query Frame = 2
Query:    5 IAGL-GSPA---YTVSKYGILGLVKCLSAELGQHGIRVNCVSPYGLATGMSMKGGVDPALIESSMSRMGNLKGQFLKTV---------GIANAALYLASDESSYVSGQNLVVDGGFS 316
            I GL GSP    Y  +K GI+G  K LS E+G   IRVNC++P  + T M+ KG  D            NLK ++LK V          IA AAL+LAS++SSY++GQ L VDGG +
Sbjct:  145 IVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMT-KGLSD------------NLKNEWLKGVPLGRVGTPEEIAMAALFLASNQSSYITGQVLSVDGGMA 248          
BLAST of CX308701 vs. ExPASy Swiss-Prot
Match: YOHF_ECOLI (Uncharacterized oxidoreductase yohF OS=Escherichia coli (strain K12) GN=yohF PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.338e-11
Identity = 38/101 (37.62%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   26 AYTVSKYGILGLVKCLSAELGQHGIRVNCVSPYGLATGMSMKGGVDPALIESSMSRMGNLKGQFLKTVGIANAALYLASDESSYVSGQNLVVDGGFSVVNP 328
            AYT +K+ + GL K ++ EL +H I VN V+P  +AT M+   G+D + ++        L+ +F  T  IA+  ++L S+ ++Y +GQ+L+VDGGF + NP
Sbjct:  152 AYTAAKHALGGLTKAMALELVRHKILVNAVAPGAIATPMN---GMDDSDVKPDAEPSIPLR-RFGATHEIASLVVWLCSEGANYTTGQSLIVDGGFMLANP 248          
BLAST of CX308701 vs. ExPASy Swiss-Prot
Match: FABG_THEMA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.666e-11
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 2
Query:   17 GSPAYTVSKYGILGLVKCLSAELGQHGIRVNCVSPYGLATGMSMKGGVDPALIESSMSRMGNLKGQFLKTVGIANAALYLASDESSYVSGQNLVVDGGFSV 319
            G   Y  SK G++G+ K  + EL    IRVN V+P  + T M+ K  +     E+++SR+    G+F K   +A   L+LASDESSYV+GQ + +DGG  +
Sbjct:  150 GQTNYAASKAGVIGMTKTWAKELAGRNIRVNAVAPGFIETPMTEK--LPEKARETALSRIP--LGRFGKPEEVAQVILFLASDESSYVTGQVIGIDGGLVI 246          
The following BLAST results are available for this feature:
BLAST of CX308701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MOMAS_ORYSJ2.897e-2354.13Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
ABA2_ARATH2.076e-2144.74Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
TS2_MAIZE4.786e-1842.19Sex determination protein tasselseed-2 OS=Zea mays... [more]
FABG_CHLTR1.761e-1244.743-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
FABG_CHLMU5.125e-1243.593-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
YOHF_ECOLI4.338e-1137.62Uncharacterized oxidoreductase yohF OS=Escherichia... [more]
FABG_THEMA5.666e-1139.603-oxoacyl-[acyl-carrier-protein] reductase OS=Ther... [more]
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Properties
Property NameValue
Genbank descriptionC21002H03Rv AbsLeaSub1 Citrus clementina cDNA clone C21002H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308701 ID=CX308701; Name=CX308701; organism=Citrus clementina; type=EST; length=398bp
AGAAATTGCAGGGCTTGGCTCCCCTGCTTATACAGTATCCAAATATGGGA
TTTTAGGACTAGTAAAGTGCTTGTCAGCAGAGCTTGGACAGCATGGAATA
AGAGTAAATTGCGTCTCGCCTTATGGTTTGGCGACAGGAATGTCGATGAA
AGGTGGAGTCGATCCGGCTCTAATAGAATCATCAATGAGCCGGATGGGTA
ATCTAAAAGGGCAATTTCTAAAAACTGTTGGCATTGCAAATGCTGCCCTC
TATTTGGCTAGTGATGAATCAAGTTATGTGAGCGGGCAAAATCTTGTTGT
GGATGGAGGATTCAGCGTGGTGAATCCTACAATTATGAGGGCTTACGGTC
TTATCAAGTAATCAATTGGAGCTTTAATTTCTAGATGATGGAGGATGC
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