CX308710

Overview
NameCX308710
Unique NameCX308710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig957 contig Ccv1_Contig957:1..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE2_CYATE (UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.105e-35
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = -3
Query:  279 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY-ESPNSTN 527
            LGTGKGTSVLEMV  FE+ASGKKIPLV +GRRPGDAE+VYAST KAERELNWKAKYGIDEMC DQWNWASKNPYGY  S +S+N
Sbjct:  267 LGTGKGTSVLEMVKAFEQASGKKIPLVMAGRRPGDAEVVYASTNKAERELNWKAKYGIDEMCRDQWNWASKNPYGYGGSEDSSN 350          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.186e-34
Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = -3
Query:  285 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYESPNS 527
            LGTG GTSVLEMVA FEKASGKKIPLV +GRRPGDAE+VYASTEKAERELNWKAK GI+EMC D WNWAS NPYGY S ++
Sbjct:  266 LGTGNGTSVLEMVAAFEKASGKKIPLVMAGRRPGDAEVVYASTEKAERELNWKAKNGIEEMCRDLWNWASNNPYGYNSSSN 346          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 8.846e-34
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = -3
Query:  279 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYESPNSTN 527
            LGTG GTSVLEMV  FEKASGKKIPLV +GRRPGDAE+VYASTE+AE ELNWKAKYGI+EMC D WNWAS NPYGY+S +  N
Sbjct:  267 LGTGNGTSVLEMVDAFEKASGKKIPLVIAGRRPGDAEVVYASTERAESELNWKAKYGIEEMCRDLWNWASNNPYGYDSSSEDN 349          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE1_CYATE (UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.543e-30
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = -3
Query:  297 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYE 527
            LGTG+GTSVLEMVA FEKASGKKIP+    RRPGDA  VYASTEKAE+EL WKAKYG++EMC DQW WAS NP+GY+
Sbjct:  275 LGTGRGTSVLEMVAAFEKASGKKIPIKMCPRRPGDATAVYASTEKAEKELGWKAKYGVEEMCRDQWKWASNNPWGYQ 351          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE1_ARATH (UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana GN=At1g12780 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.846e-29
Identity = 58/78 (74.36%), Postives = 66/78 (84.62%), Query Frame = -3
Query:  294 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYES 527
            LGTG+GTSVLEMVA FEKASGKKIP+    RR GDA  VYASTEKAE+EL WKAKYG+DEMC DQW WA+ NP+GY++
Sbjct:  272 LGTGQGTSVLEMVAAFEKASGKKIPIKLCPRRSGDATAVYASTEKAEKELGWKAKYGVDEMCRDQWKWANNNPWGYQN 349          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE1_PEA (UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 57/76 (75.00%), Postives = 63/76 (82.89%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LGTG+G+SVLEMVA FEKASGKKI L    RRPGDA  VYAST KAE+EL WKAKYG++EMC DQWNWA  NP+GY
Sbjct:  271 LGTGRGSSVLEMVAAFEKASGKKIALKLCPRRPGDATEVYASTAKAEKELGWKAKYGVEEMCRDQWNWAKNNPWGY 346          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.240e-19
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = -3
Query:  294 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYES 527
            LGTG G SVLEMV  FEK SGK++P   + RRPGD    +A   KA+REL W+AK G++EMC D W W S N  GY+S
Sbjct:  260 LGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIATCFADPAKAKRELGWEAKRGLEEMCADSWRWQSSNVNGYKS 337          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_DROME (Probable UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=CG12030 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LGTG G SVL+MV  FEKASGKK+      RR GD    YA    A+++L WKA+ GID+MC D W W S+NP GY
Sbjct:  272 LGTGVGYSVLDMVKAFEKASGKKVNYTLVDRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGY 347          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_HUMAN (UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.676e-16
Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LGTG G SVL+MV   EKASGKKIP     RR GD    YA+   A+ EL W A  G+D MC D W W  +NP G+
Sbjct:  269 LGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGF 344          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_PONAB (UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.859e-16
Identity = 40/76 (52.63%), Postives = 45/76 (59.21%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LGTG G SVL+MV   EKASGKKIP     RR GD    YA+   A  EL W A  G+D MC D W W  +NP G+
Sbjct:  269 LGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSGF 344          
The following BLAST results are available for this feature:
BLAST of CX308710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GALE2_CYATE2.105e-3584.52UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetrag... [more]
GALE3_ARATH5.186e-3482.72UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]
GALE2_ARATH8.846e-3479.52UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
GALE1_CYATE4.543e-3076.62UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetrag... [more]
GALE1_ARATH3.846e-2974.36UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana ... [more]
GALE1_PEA7.253e-2875.00UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE P... [more]
GALE_BACSU1.240e-1956.41UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
GALE_DROME6.805e-1855.26Probable UDP-glucose 4-epimerase OS=Drosophila mel... [more]
GALE_HUMAN1.676e-1652.63UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE... [more]
GALE_PONAB2.859e-1652.63UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE... [more]

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Properties
Property NameValue
Genbank descriptionC21003A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21003A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308710 ID=CX308710; Name=CX308710; organism=Citrus clementina; type=EST; length=529bp
TTTTTTTTTTTTTTTTTTTTTTTGAAGAAAAGCTTTAAATTAATACTGAA
AATTTGAAAACCAATAACAGACAAACCAATGACACTTTTTCCAAATAACG
GATGCCTAATTAAATCTTCTCAGCAGAAGATTGTTCAGGGACCTTTTATT
GTTGTATGATACCACAAGGTTTTTTAGCTTAAAAATCTGGATAATTAAGT
ATGCATGATAAGCACGACACTGTATATAGCGAGAAACTACTGAAGACAAT
CAATAAGGATGACGAATGACAGCTATTAGTTAGTGGAGTTTGGAGATTCG
TAGCCATAAGGGTTCTTGCTGGCCCAATTCCATTGATCCCCGCACATCTC
GTCAATGCCATACTTTGCCTTCCAATTCAATTCGCGTTCTGCCTTTTCTG
TTGATGCATAAACAATCTCAGCGTCCCCAGGTCGCCTCCCAGACTTTACA
AGAGGAATTTTCTTTCCAGAGGCTTTTTCGAATACTGCAACCATCTCCAA
AACTGATGTCCCTTTTCCTGTTCCCAAGC
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