CX308729

Overview
NameCX308729
Unique NameCX308729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length252
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14946 contig Ccv1_Contig14946:126..377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_ARATH (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.480e-27
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVSKS 198
            MDKKLQIKLNANRM+ GTLRGFDQFMNLV+DNTVEVNGN+K DIGMVVIRGNS+VTVEALEPV +S
Sbjct:   14 MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVGRS 79          
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_MEDSA (Probable small nuclear ribonucleoprotein G OS=Medicago sativa GN=C29 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.347e-27
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1
Query:    1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 189
            MDK+LQI L ANRMIVGTLRGFDQFMNLV+DNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV
Sbjct:   14 MDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 76          
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_DROME (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster GN=SmG PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.217e-15
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV-EVNGNEKNDIGMVVIRGNSVVTVEALEPV 189
            MDK++ +KLN  R + G LRGFD FMN+V+D+TV E   N KN+IGMVVIRGNS+V VEAL+ V
Sbjct:   13 MDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76          
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_MOUSE (Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.425e-15
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 189
            MDKKL +KLN  R + G LRGFD FMNLVID  VE+    ++N+IGMVVIRGNS++ +EALE V
Sbjct:   13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76          
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_HUMAN (Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.425e-15
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 189
            MDKKL +KLN  R + G LRGFD FMNLVID  VE+    ++N+IGMVVIRGNS++ +EALE V
Sbjct:   13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76          
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_BOVIN (Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.425e-15
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 189
            MDKKL +KLN  R + G LRGFD FMNLVID  VE+    ++N+IGMVVIRGNS++ +EALE V
Sbjct:   13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76          
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_DICDI (Probable small nuclear ribonucleoprotein G OS=Dictyostelium discoideum GN=snrpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRGNSVVTVEALEPVS 192
            +DKKL IKLN NR + G LRGFD FMN+ + +TVE V+  EK +IGMV+IRGNS++ +E LE ++
Sbjct:   15 LDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSILLMEPLESMA 79          
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXGL_HUMAN (Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.030e-12
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    4 DKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKNDIGMVVIRGNSVVTVEALEPV 189
            DKK  +KLN  R + G LRGFD FMNLVID  VE+  +G +KN IGMV IRGNS++ +EALE V
Sbjct:   14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN-IGMVEIRGNSIIMLEALERV 76          
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_CAEEL (Probable small nuclear ribonucleoprotein G OS=Caenorhabditis elegans GN=snr-7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.719e-12
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKNDIGMVVIRGNSVVTVEALEPVS 192
            MDK++ +KLN NR + G LRGFD FMN+VID  VE   +G   N +GM VIRGNSVV +E  E +S
Sbjct:   13 MDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVN-LGMTVIRGNSVVIMEPKERIS 77          
The following BLAST results are available for this feature:
BLAST of CX308729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RUXG_ARATH1.480e-2787.88Probable small nuclear ribonucleoprotein G OS=Arab... [more]
RUXG_MEDSA7.347e-2793.65Probable small nuclear ribonucleoprotein G OS=Medi... [more]
RUXG_DROME2.217e-1562.50Probable small nuclear ribonucleoprotein G OS=Dros... [more]
RUXG_MOUSE8.425e-1562.50Small nuclear ribonucleoprotein G OS=Mus musculus ... [more]
RUXG_HUMAN8.425e-1562.50Small nuclear ribonucleoprotein G OS=Homo sapiens ... [more]
RUXG_BOVIN8.425e-1562.50Small nuclear ribonucleoprotein G OS=Bos taurus GN... [more]
RUXG_DICDI1.589e-1356.92Probable small nuclear ribonucleoprotein G OS=Dict... [more]
RUXGL_HUMAN1.030e-1260.94Small nuclear ribonucleoprotein G-like protein OS=... [more]
RUXG_CAEEL8.719e-1256.06Probable small nuclear ribonucleoprotein G OS=Caen... [more]
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Properties
Property NameValue
Genbank descriptionC21003B08Rv AbsLeaSub1 Citrus clementina cDNA clone C21003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308729 ID=CX308729; Name=CX308729; organism=Citrus clementina; type=EST; length=252bp
ATGGATAAGAAGCTTCAGATCAAGCTCAATGCTAATAGGATGATTGTTGG
AACACTTCGTGGATTTGATCAGTTTATGAATCTTGTGATTGACAACACAG
TTGAGGTCAATGGCAATGAGAAAAATGATATAGGGATGGTGGTTATCAGA
GGGAATAGTGTAGTCACTGTTGAAGCCCTTGAACCTGTAAGCAAATCACA
GTGACGTGGTTTGCCACTGGGGTCGATGTAATGTGCTTTCTGATCTTCTT
TG
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