CX308734

Overview
NameCX308734
Unique NameCX308734
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig757 contig Ccv1_Contig757:117..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308734 vs. ExPASy Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.065e-15
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 3 
Query:    3 YDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILL--GGAFRDYNKEKNAGVFSIDVKLKLKVRFKLGKIETPKFKPTIECDLKVP--LNSSN 296
            YDR EA VYY ++RL +VP+  FY G KNT  L  +FEGQ ++L  G   + +  ++  GV+ IDVKL +  R  +  + T   KP + C LK+P  L SSN
Sbjct:   48 YDRFEATVYYMNQRLGAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVLHLVTWPMKPVVRCHLKIPLALGSSN 149
The following BLAST results are available for this feature:
BLAST of CX308734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYP24_ARATH3.065e-1543.14Putative syntaxin-24 OS=Arabidopsis thaliana GN=SY... [more]
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Properties
Property NameValue
Genbank descriptionC21003C01Rv AbsLeaSub1 Citrus clementina cDNA clone C21003C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308734 ID=CX308734; Name=CX308734; organism=Citrus clementina; type=EST; length=521bp
ACTACGACCGTATCGAAGCTAGGGTTTACTACGACGACAAGAGGTTAACA
TCTGTTCCTCTGACTCCATTTTATCAAGGACACAAAAACACCAGCTATTT
GAACCCCGTTTTCGAAGGGCAGCAGATTCTGCTAGGCGGTGCATTTAGAG
ACTATAATAAAGAGAAGAATGCCGGAGTTTTTAGCATCGACGTGAAGCTT
AAATTGAAAGTTAGGTTCAAGTTGGGAAAAATCGAGACTCCAAAGTTCAA
GCCCACGATCGAGTGTGATCTGAAGGTTCCTTTGAATTCTTCTAATGGCA
GATTTGCTGGCCGTTTTGAAACTACTAAGTGCGATGTTGATTTCTAGTTA
ATTGATCATCAGTGTTGATGATCATGATGATCTTATTCTCTTGTTTGATC
GAGTCTTCGTGTATTATTATTTTTTTCCTTTTTTGAGTTTATTATTATAT
TCTTTTGTTTTTTAGCGTATACATTTTACGGTCTTGTTATTATACGGCTT
CCTTTTCATTGAGGCTACACC
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