CX308747

Overview
NameCX308747
Unique NameCX308747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS73_ARATH (40S ribosomal protein S7-3 OS=Arabidopsis thaliana GN=RPS7C PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.453e-38
Identity = 75/92 (81.52%), Postives = 86/92 (93.48%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKD 367
            MF+ + KI+KDK+AEPTE EE VAQALFDLENTNQELKS+LKDLYINQA+ MD+SGNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGKD
Sbjct:    1 MFSAQNKIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKD 92          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_ORYSJ (40S ribosomal protein S7 OS=Oryza sativa subsp. japonica GN=RPS7 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 3.204e-38
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKD 367
            M+T ++KIQKDK  EPTEFE+TVAQA FDLEN NQELKSDLKDLYIN A+QMD+ GNRKA+++YVPYRLRKAY+KIH RLVRELEKKFSGKD
Sbjct:    1 MYTARRKIQKDKGLEPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKD 92          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_BRAOL (40S ribosomal protein S7 OS=Brassica oleracea GN=RPS7 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.077e-37
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKD 367
            MF+ + KI KDK   PTEFEE VAQA FDLENTNQELKSDLKDLYINQA+ MD++GNRKA+V+YVP+RLRKA+RKIHSRLVRELEKKFSG D
Sbjct:    1 MFSAQNKIHKDKGVAPTEFEERVAQAFFDLENTNQELKSDLKDLYINQAVSMDIAGNRKAVVIYVPFRLRKAFRKIHSRLVRELEKKFSGND 92          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS72_ARATH (40S ribosomal protein S7-2 OS=Arabidopsis thaliana GN=RPS7B PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.542e-37
Identity = 73/92 (79.35%), Postives = 83/92 (90.22%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKD 367
            M++ + KI KDK   PTEFEE V QALFDLENTNQELKS+LKDLYINQA+QMD+SGNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGKD
Sbjct:    1 MYSGQNKIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKD 92          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_AVIMR (40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.626e-37
Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKD 367
            M+T  +KI KDKDAEPTEFEE VAQALFD ENTNQE+KSDLKDLYIN A+Q+DVSG +KA+V++VPYRLRK++RKIH RLVRELEKKFSGK+
Sbjct:    1 MYTALQKIHKDKDAEPTEFEENVAQALFDFENTNQEIKSDLKDLYINSALQIDVSGGKKAVVIHVPYRLRKSFRKIHPRLVRELEKKFSGKE 92          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_SECCE (40S ribosomal protein S7 OS=Secale cereale GN=RPS7 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.891e-37
Identity = 73/92 (79.35%), Postives = 83/92 (90.22%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKD 367
            M+T +KKIQKDK  EP+EFE+TVAQA FDLEN NQELKSD+KDLYIN A QMDV+GNRKA+V++VPYRLRK +RKIH RLVRELEKKFSGKD
Sbjct:    1 MYTARKKIQKDKGLEPSEFEDTVAQAFFDLENGNQELKSDVKDLYINAAFQMDVAGNRKAVVIHVPYRLRKNFRKIHVRLVRELEKKFSGKD 92          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_HORVU (40S ribosomal protein S7 OS=Hordeum vulgare GN=RPS7 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.149e-34
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKD 367
            M+T +KKIQKDK  EP+EFE+TVAQA FDLEN NQELKSDLKDLYIN AIQMDV GNRKA+V++VPYRLRK +RKIH RLVRELE + SGKD
Sbjct:    1 MYTARKKIQKDKGVEPSEFEDTVAQAFFDLENGNQELKSDLKDLYINTAIQMDVVGNRKAVVIHVPYRLRKPFRKIHVRLVRELE-RVSGKD 91          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS71_ARATH (40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.819e-33
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKD 367
            MF+ + KI K+K  E +E +E VAQA FDLENTNQELKS+LKDLY+N A+Q+D+SG RKAIVV VPYRLRKAYRKIH RLVRELEKKFSGKD
Sbjct:    1 MFSAQHKIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKD 92          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_DANRE (40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            MF+T  KI K    +P EFE  ++QAL +LE  N +LK+ L++L+I  A +++V G+RKAI+++VP    K+++KI  RLVRELEKKFSGK
Sbjct:    1 MFSTSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELHITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGK 90          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_TAKRU (40S ribosomal protein S7 OS=Takifugu rubripes GN=rps7 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.281e-18
Identity = 46/91 (50.55%), Postives = 65/91 (71.43%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            MF+T  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G+RKAI+++VP    K+++KI  RLVRELEKKFSGK
Sbjct:    1 MFSTSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGK 90          
The following BLAST results are available for this feature:
BLAST of CX308747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS73_ARATH2.453e-3881.5240S ribosomal protein S7-3 OS=Arabidopsis thaliana... [more]
RS7_ORYSJ3.204e-3880.4340S ribosomal protein S7 OS=Oryza sativa subsp. ja... [more]
RS7_BRAOL2.077e-3779.3540S ribosomal protein S7 OS=Brassica oleracea GN=R... [more]
RS72_ARATH3.542e-3779.3540S ribosomal protein S7-2 OS=Arabidopsis thaliana... [more]
RS7_AVIMR4.626e-3778.2640S ribosomal protein S7 OS=Avicennia marina GN=RP... [more]
RS7_SECCE7.891e-3779.3540S ribosomal protein S7 OS=Secale cereale GN=RPS7... [more]
RS7_HORVU2.149e-3478.2640S ribosomal protein S7 OS=Hordeum vulgare GN=RPS... [more]
RS71_ARATH1.819e-3375.0040S ribosomal protein S7-1 OS=Arabidopsis thaliana... [more]
RS7_DANRE2.159e-1850.5540S ribosomal protein S7 OS=Danio rerio GN=rps7 PE... [more]
RS7_TAKRU6.281e-1850.5540S ribosomal protein S7 OS=Takifugu rubripes GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC21003D04Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308747 ID=CX308747; Name=CX308747; organism=Citrus clementina; type=EST; length=369bp
GCGGGGCTCCCTTTGTTAGTAGCAGCAGCAAGCTTGTGTGTTTTTTCTAC
TCGTGCATACAGATCTAAAAGCTTTGCTGCGAGTTGTCAAGATGTTCACG
ACTAAGAAGAAAATCCAAAAAGACAAGGATGCCGAACCTACTGAGTTTGA
GGAGACAGTTGCCCAGGCACTGTTTGATTTGGAGAATACCAACCAGGAGC
TTAAAAGTGACTTGAAAGATCTTTACATTAATCAAGCCATTCAAATGGAT
GTTTCTGGAAACCGCAAGGCAATTGTTGTCTATGTGCCTTACAGATTGAG
GAAGGCTTATCGGAAGATTCATTCTCGCCTTGTGAGAGAGCTGGAGAAGA
AATTCAGTGGCAAGGATGT
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