CX308760

Overview
NameCX308760
Unique NameCX308760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308760 vs. ExPASy Swiss-Prot
Match: LEU12_ARATH (2-isopropylmalate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=IPMS2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.049e-25
Identity = 60/85 (70.59%), Postives = 69/85 (81.18%), Query Frame = -3
Query:  119 MNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFKDQLP--AKDSVERTSVSA 367
            MNAVT GIDAIATTRVLIRG+ +  ST+A TGE+V+RTFSGTGAGMDIVVSSVKAY+GALNKMLGFK+     +K  +E   V A
Sbjct:  547 MNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIVVSSVKAYVGALNKMLGFKEHTSTLSKTPLETNEVPA 631          
BLAST of CX308760 vs. ExPASy Swiss-Prot
Match: LEU11_ARATH (2-isopropylmalate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=IPMS1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.633e-24
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = -3
Query:  119 MNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFKDQLPAKDSVERTSVSA 367
            MNAVT GIDAIATTRVLIRG     ST+A TGE VQRTFSGTGAGMDIVVSSVKAY+GALNKM+ FK+    K   ++  V+A
Sbjct:  593 MNAVTEGIDAIATTRVLIRGSNKYSSTNAITGEEVQRTFSGTGAGMDIVVSSVKAYVGALNKMMDFKENSATKIPSQKNRVAA 675          
BLAST of CX308760 vs. ExPASy Swiss-Prot
Match: LEU1B_SOLPN (2-isopropylmalate synthase B OS=Solanum pennellii GN=IPMSB PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.307e-23
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = -3
Query:  125 MNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFKDQLPAKDSVERTSV 367
            MNAVT GIDAIA+TRVLIRGE    STHA TGETV RTFSGTGA MDIV+SSV+AY+GALNKM+ F+  +   +  E ++V
Sbjct:  531 MNAVTQGIDAIASTRVLIRGENGHTSTHALTGETVHRTFSGTGADMDIVISSVRAYVGALNKMMSFRKLMAKNNKPESSAV 611          
BLAST of CX308760 vs. ExPASy Swiss-Prot
Match: LEU1A_SOLPN (2-isopropylmalate synthase A OS=Solanum pennellii GN=IPMSA PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.070e-17
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = -3
Query:  167 MNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFK 367
            MNAVT GIDAIA+TRV I         + STG+T+ RTFSGTGA MD+V+SSV+AYIGALNKML ++
Sbjct:  508 MNAVTEGIDAIASTRVSICSIDRHTIMNGSTGQTIHRTFSGTGADMDVVISSVRAYIGALNKMLSYE 574          
The following BLAST results are available for this feature:
BLAST of CX308760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LEU12_ARATH9.049e-2570.592-isopropylmalate synthase 2, chloroplastic OS=Ara... [more]
LEU11_ARATH2.633e-2469.882-isopropylmalate synthase 1, chloroplastic OS=Ara... [more]
LEU1B_SOLPN1.307e-2366.672-isopropylmalate synthase B OS=Solanum pennellii ... [more]
LEU1A_SOLPN9.070e-1764.182-isopropylmalate synthase A OS=Solanum pennellii ... [more]
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Properties
Property NameValue
Genbank descriptionC21003E06Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308760 ID=CX308760; Name=CX308760; organism=Citrus clementina; type=EST; length=369bp
ATGGAACCCACTGGGGGATTTGATCCACACTTCTGCACAATCACAAGAAA
GCATAAGAAGCCAGGGTTCTGTTCGATTACATGATCCATTGCAATATAAA
ATTTTCCACATCTCCTCAAGCAGACACTGAAGTTCTCTCTACAGAATCCT
TTGCTGGCAACTGGTCTTTGAAACCTAACATCTTGTTAAGAGCCCCAATG
TAAGCCTTAACACTAGAAACAACGATATCCATTCCTGCCCCGGTTCCACT
AAATGTTCGCTGAACTGTTTCACCGGTAGAAGCATGAGTTGATAGTTGAC
TTTTCTCCCCACGAATTAGAACACGGGTGGTTGCTATTGCATCAATGCCT
GCTGTAACTGCATTCATGG
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