CX308769

Overview
NameCX308769
Unique NameCX308769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length279
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14412 contig Ccv1_Contig14412:256..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308769 vs. ExPASy Swiss-Prot
Match: URM12_ARATH (Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana GN=URM1-2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.494e-15
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = -1
Query:    1 CDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVL 156
            CDSVK+H V++     S+ L MKDLLSWV TNLIKERPEMFMKGD+VRPGVL
Sbjct:   15 CDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRPGVL 66          
BLAST of CX308769 vs. ExPASy Swiss-Prot
Match: URM1_ORYSJ (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica GN=URM1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.377e-14
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:    1 SVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVL 150
            S KVH VD+ P  G  K++MK LL+WV +NLIKERPEMF+KGDSVRPGVL
Sbjct:   18 STKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVL 67          
BLAST of CX308769 vs. ExPASy Swiss-Prot
Match: URM1_ORYSI (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica GN=URM1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.377e-14
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:    1 SVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVL 150
            S KVH VD+ P  G  K++MK LL+WV +NLIKERPEMF+KGDSVRPGVL
Sbjct:   18 STKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVL 67          
BLAST of CX308769 vs. ExPASy Swiss-Prot
Match: URM11_ARATH (Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana GN=URM1-1 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.377e-14
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = -1
Query:    1 CDSVKVHNVDVVPPKG--SEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVL 156
            CDS K+H V+V  P G  S+   MK LLSWV TNLIKERPEMFMKGD+VRPGVL
Sbjct:   15 CDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVL 68          
BLAST of CX308769 vs. ExPASy Swiss-Prot
Match: URM1_MAIZE (Ubiquitin-related modifier 1 homolog OS=Zea mays GN=URM1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.940e-12
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = -1
Query:    1 DSVKVHNVDVVPPK-GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVL 153
            +S KVH V+V  PK G  K+ MK LLSWV  NLIKERPEMF+K DSVRPGVL
Sbjct:   17 NSTKVHKVEVTTPKDGQGKVTMKFLLSWVKENLIKERPEMFLKADSVRPGVL 68          
The following BLAST results are available for this feature:
BLAST of CX308769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
URM12_ARATH6.494e-1573.08Ubiquitin-related modifier 1 homolog 2 OS=Arabidop... [more]
URM1_ORYSJ9.377e-1470.00Ubiquitin-related modifier 1 homolog OS=Oryza sati... [more]
URM1_ORYSI9.377e-1470.00Ubiquitin-related modifier 1 homolog OS=Oryza sati... [more]
URM11_ARATH9.377e-1470.37Ubiquitin-related modifier 1 homolog 1 OS=Arabidop... [more]
URM1_MAIZE3.940e-1269.23Ubiquitin-related modifier 1 homolog OS=Zea mays G... [more]
back to top
Properties
Property NameValue
Genbank descriptionC21003F03Rv AbsLeaSub1 Citrus clementina cDNA clone C21003F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308769 ID=CX308769; Name=CX308769; organism=Citrus clementina; type=EST; length=279bp
TAGAACACCAGGTCTCACAGAATCTCCTTTCATGAACATTTCAGGCCTCT
CCTTGATCAAATTGGTGCCGACCCAAGAAAGCAAATCTTTCATAATCAAC
TTCTCTGATCCTTTTGGTGGAACAACATCGACATTATGGACCTTTACCGA
ATCACAAAGAAGCTCTAACCCTCCACCGAATTCTAGAGTCAGTTGCATGG
TTCAAGATTTGCAGAAATTTCAGAAATTTGCAAAACCCTAGAAGAACAGA
GATGTGAGAACGTTGTGTTAACTTCCCCG
back to top