CX308783

Overview
NameCX308783
Unique NameCX308783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length217
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig961 contig Ccv1_Contig961:2..218. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.910e-20
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:   67 HESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            HESINNRLALVMKSGKYTLGYKTVL+SLR+SKGKLII++NNCPPLRKSEI
Sbjct:   11 HESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.643e-18
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:   67 HESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            HESIN+RLALVMKSGK+TLGYKTVL SLR++KGKLII++NNCPPLRKSEI
Sbjct:   11 HESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.152e-18
Identity = 41/50 (82.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:   67 HESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            HE IN+RLALVMKSGKYTLGYK+VL+SLR+SKGKLI++S+NCPPLR+SEI
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.152e-18
Identity = 41/50 (82.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:   67 HESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            HE IN+RLALVMKSGKYTLGYK+VL+SLR+SKGKLI++S+NCPPLR+SEI
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.391e-17
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:   67 HESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            HE IN+RLALVMKSGKYTLGYK+VL+SLR SKGKLI++S NCPPLR+SEI
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL30_WHEAT (60S ribosomal protein L30 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.284e-17
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 1
Query:   70 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            E+INN+L LVMKSGKYTLGYKTVL++LR+S GKLIIL+NNCPPLRKSEI
Sbjct:   12 ENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEI 60          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL30_ORYSJ (60S ribosomal protein L30 OS=Oryza sativa subsp. japonica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.013e-17
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 1
Query:   70 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            ++INN+L LVMKSGKYTLGYKTVLR+LR SK KL+I+SNNCPPLRKSEI
Sbjct:   12 DNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL30_MAIZE (60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.008e-16
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 1
Query:   70 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            ++INN+L LVMKSGKYTLGYKTVLR+LR SK KL+I++NNCPPLRKSEI
Sbjct:   12 DNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEI 60          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL30_RAT (60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.714e-13
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 1
Query:   70 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL30_OPHHA (60S ribosomal protein L30 OS=Ophiophagus hannah GN=RPL30 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.714e-13
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 1
Query:   70 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
The following BLAST results are available for this feature:
BLAST of CX308783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL30_LUPLU3.910e-2092.0060S ribosomal protein L30 OS=Lupinus luteus GN=RPL... [more]
RL30_EUPES1.643e-1886.0060S ribosomal protein L30 OS=Euphorbia esula GN=RP... [more]
RL303_ARATH8.152e-1882.0060S ribosomal protein L30-3 OS=Arabidopsis thalian... [more]
RL301_ARATH8.152e-1882.00Putative 60S ribosomal protein L30-1 OS=Arabidopsi... [more]
RL302_ARATH1.391e-1782.0060S ribosomal protein L30-2 OS=Arabidopsis thalian... [more]
RL30_WHEAT5.284e-1783.6760S ribosomal protein L30 OS=Triticum aestivum PE=... [more]
RL30_ORYSJ9.013e-1781.6360S ribosomal protein L30 OS=Oryza sativa subsp. j... [more]
RL30_MAIZE2.008e-1679.5960S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=... [more]
RL30_RAT2.714e-1371.4360S ribosomal protein L30 OS=Rattus norvegicus GN=... [more]
RL30_OPHHA2.714e-1371.4360S ribosomal protein L30 OS=Ophiophagus hannah GN... [more]

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Properties
Property NameValue
Genbank descriptionC21003G06Rv AbsLeaSub1 Citrus clementina cDNA clone C21003G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308783 ID=CX308783; Name=CX308783; organism=Citrus clementina; type=EST; length=217bp
GCGGGGTCTTTTTTGGGTGCAACCAAACAATCGAAAATGGTTACAAGCAA
GAAGACAAAGAAGACTCATGAGAGCATCAACAATAGGTTGGCTCTTGTGA
TGAAGAGCGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCTC
AGGGCCTCTAAGGGAAAGTTGATTATTTTGTCAAATAATTGCCCACCGTT
GAGAAAATCAGAGATTG
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