CX308794

Overview
NameCX308794
Unique NameCX308794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15147 contig Ccv1_Contig15147:878..1258. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 4.522e-64
Identity = 109/125 (87.20%), Postives = 117/125 (93.60%), Query Frame = -3
Query:    2 CIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVF 376
            C+YG PLLVVNGFLVLIT LQHTHP+LPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY+FD TPF KAMWREA+EC+YVEPD+  ++KGVF
Sbjct:  253 CVYGVPLLVVNGFLVLITFLQHTHPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDQSTESKGVF 377          
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 2.931e-63
Identity = 108/125 (86.40%), Postives = 114/125 (91.20%), Query Frame = -3
Query:    2 CIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVF 376
            C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAME TKAIKPILG+YYQFDGTP+ KAMWREAKEC+YVEPD   + KGVF
Sbjct:  254 CLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQFDGTPWVKAMWREAKECIYVEPDRQGEKKGVF 378          
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.527e-62
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = -3
Query:    2 CIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVF 376
            C+YG PLL+VNGFLV IT LQHTH +LPHY SSEWDW +GALAT+DRDYGILNKVFH+ITDTHVAHHLFSTMPHYHAMEAT AIKPILGEYYQFD TPFYKA+WREA+ECLYVEPDEG   KGV+
Sbjct:  257 CVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVY 381          
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.100e-61
Identity = 106/125 (84.80%), Postives = 114/125 (91.20%), Query Frame = -3
Query:    2 CIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVF 376
            C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY+AMEATKAIKPILG+YYQFDGTP+Y AM+REAKEC+YVEPD     KGV+
Sbjct:  253 CLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAKECIYVEPDREGDKKGVY 377          
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 3.047e-44
Identity = 77/125 (61.60%), Postives = 97/125 (77.60%), Query Frame = -3
Query:    2 CIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVF 376
            CIYG P+L V  F  +IT L HTH SLPHY SSEW+W RGAL+T+DRD+G LN V H++T THV HHLFS +PHYHA EA  AI  +LG++Y+ D TP  KAMWREAKEC+++EP++G  +KGV+
Sbjct:  246 CIYGIPVLGVFIFFDIITYLHHTHLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYKIDRTPILKAMWREAKECIFIEPEKGRGSKGVY 370          
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.049e-32
Identity = 67/115 (58.26%), Postives = 80/115 (69.57%), Query Frame = -3
Query:   20 PLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 361
            P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  281 PYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.049e-32
Identity = 67/115 (58.26%), Postives = 80/115 (69.57%), Query Frame = -3
Query:   20 PLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 361
            P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  281 PYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.605e-23
Identity = 59/128 (46.09%), Postives = 74/128 (57.81%), Query Frame = -3
Query:   20 FCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY----QFDGTPFY--KAMWREAKECLYVEPDEGD 379
            F IYG P L+   +L  +T L H      LP Y   EW + RG L TVDRDYG+ N + H+I  THV HHLF  +PHYH  EATKA KP+LG+YY    +    PF+  K + R  K+  YV  D G+
Sbjct:  236 FKIYGAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSYLRGGLTTVDRDYGLFNNIHHDI-GTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDLTRSMKQDHYVS-DSGE 361          
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = -3
Query:   98 IYGGPLLVVNGFLVLITLLQH---THPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 373
            +YG P L+   +L  +T L H   TH  LP Y   EW + RG L TVDRDYG +N V H+I  THV HHLF  +PHYH +EATK+ K +LG+YY+
Sbjct:  238 LYGVPYLIFVMWLDFVTYLHHHGYTH-KLPWYRGQEWSYLRGGLTTVDRDYGWINNVHHDI-GTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYR 330          
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.799e-20
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = -3
Query:   98 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 373
            +YG P  +   +L  +T L H   H  LP Y   EW + RG L TVDRDYG +  + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  241 LYGIPYWIFVMWLDFVTYLHHHGHHQKLPWYRGKEWSYLRGGLTTVDRDYGWIYNIHHDI-GTHVIHHLFPQIPHYHLVEATQAAKPVLGDYYR 333          
The following BLAST results are available for this feature:
BLAST of CX308794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FD6E2_SOYBN4.522e-6487.20Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU2.931e-6386.40Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN5.527e-6284.00Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH2.100e-6184.80Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL3.047e-4461.60Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORIS2.049e-3258.26Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP2.049e-3258.26Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD3E_TOBAC6.605e-2346.09Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU8.074e-2151.58Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN1.799e-2048.94Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionC21003H05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308794 ID=CX308794; Name=CX308794; organism=Citrus clementina; type=EST; length=381bp
AGAAGACACCTTTGTTCTGGTCACCTTCGTCCGGTTCAACGTAAAGACAC
TCCTTTGCTTCCCTCCACATTGCCTTATAAAATGGAGTCCCATCGAACTG
ATAATATTCTCCCAAAATTGGCTTTATTGCCTTCGTAGCCTCCATTGCAT
GATAATGTGGCATTGTTGAAAACAAATGGTGAGCTACATGAGTATCAGTA
ATGTTATGGAAGACCTTGTTCAAGATCCCATAGTCTCTATCAACAGTTGC
TAGGGCTCCTCGGAACCAGTCCCATTCTGAAGAATGGTAATGTGGCAGTG
AAGGGTGAGTGTGCTGCAACAATGTGATCAAAACGAGAAATCCGTTCACT
ACCAGCAAAGGTCCTCCATAGATGCAGAACA
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