CX308797

Overview
NameCX308797
Unique NameCX308797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length392
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15371 contig Ccv1_Contig15371:285..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308797 vs. ExPASy Swiss-Prot
Match: VSR1_ARATH (Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 3.083e-65
Identity = 110/130 (84.62%), Postives = 127/130 (97.69%), Query Frame = 1
Query:    1 TKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECP 390
            TKECA+ +IKSLG+DLKKVD+C+GDPEADV+N VLK EQ++QIGKGSRGDVTILPTLV+NNRQYRGKL+KGAVLKA+C+GFQE+TEPAICL+ED+ETNECLENNGGCWQDKAANITAC+DTFRGR+CECP
Sbjct:  316 TKECADGIIKSLGIDLKKVDKCIGDPEADVENPVLKAEQESQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAMCSGFQESTEPAICLTEDLETNECLENNGGCWQDKAANITACRDTFRGRLCECP 445          
BLAST of CX308797 vs. ExPASy Swiss-Prot
Match: VSR3_ARATH (Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 6.429e-63
Identity = 106/129 (82.17%), Postives = 123/129 (95.35%), Query Frame = 1
Query:    4 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECP 390
            KECA+ VIKSLG+D KK+D+C+GDP+AD+DN VLK EQDAQ+GKGSRGDVTILPTLV+NNRQYRGKL+K AVLKA+C+GF+ETTEPAICLS D+E+NECL+NNGGCWQDK+ANITACKDTFRGRVCECP
Sbjct:  322 KECADSVIKSLGIDSKKLDKCMGDPDADLDNPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLEKSAVLKALCSGFEETTEPAICLSTDVESNECLDNNGGCWQDKSANITACKDTFRGRVCECP 450          
BLAST of CX308797 vs. ExPASy Swiss-Prot
Match: VSR1_PEA (Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.583e-61
Identity = 103/129 (79.84%), Postives = 119/129 (92.25%), Query Frame = 1
Query:    4 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECP 390
            KECA  VIKSLG+D++K+D+C+GDP AD +N +LK EQDAQIGKG+RGDVTILPTLV+NNRQYRGKL+KGAVLKAIC+GF+ETT+PA+CLS D+ETNECL NNGGCWQDK ANI ACKDTFRGRVCECP
Sbjct:  317 KECANSVIKSLGLDVEKIDKCMGDPNADTENSILKEEQDAQIGKGTRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTDPAVCLSNDVETNECLTNNGGCWQDKTANIAACKDTFRGRVCECP 445          
BLAST of CX308797 vs. ExPASy Swiss-Prot
Match: VSR4_ARATH (Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 4.607e-61
Identity = 102/129 (79.07%), Postives = 122/129 (94.57%), Query Frame = 1
Query:    4 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECP 390
            K+CAE VIKSLG+D +K+D+C+GDP+AD+DN VLK EQDAQ+GKG+RGDVTILPTLV+NNRQYRGKL+K AVLKA+C+GF+E+TEPAICLS D+ETNECL+NNGGCWQDK+ANITACKDTFRG+VC CP
Sbjct:  322 KDCAESVIKSLGIDSRKIDKCMGDPDADLDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLEKSAVLKALCSGFEESTEPAICLSTDMETNECLDNNGGCWQDKSANITACKDTFRGKVCVCP 450          
BLAST of CX308797 vs. ExPASy Swiss-Prot
Match: VSR2_ARATH (Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 4.768e-58
Identity = 98/129 (75.97%), Postives = 119/129 (92.25%), Query Frame = 1
Query:    4 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECP 390
            K+CA+QVI+SLGVD+KK+D+C+GD +A+ +N VLK EQ AQ+GKGSRGDVTILPT+VINNRQYRGKL + AVLKA+C+GF+ETTEP ICL+EDIETNECL+NNGGCW+DK  NITAC+DTFRGRVC+CP
Sbjct:  321 KKCADQVIQSLGVDVKKIDKCIGDIDANAENPVLKEEQVAQVGKGSRGDVTILPTIVINNRQYRGKLQRSAVLKALCSGFRETTEPPICLTEDIETNECLQNNGGCWEDKTTNITACRDTFRGRVCQCP 449          
BLAST of CX308797 vs. ExPASy Swiss-Prot
Match: VSR6_ARATH (Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 1.696e-55
Identity = 93/130 (71.54%), Postives = 116/130 (89.23%), Query Frame = 1
Query:    1 TKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECP 390
            +KECAE+V++SLG+ L K+ +C+GDP+A+V+N+VLK EQ  Q+G+G RGDVTILPTL++NN QYRGKL++ AVLKAIC+GF+E TEP ICLS DIETNECLE NGGCW+DK +N+TACKDTFRGRVCECP
Sbjct:  318 SKECAERVVESLGLPLDKIKKCIGDPDANVENEVLKAEQALQVGQGDRGDVTILPTLIVNNAQYRGKLERNAVLKAICSGFKERTEPGICLSGDIETNECLEANGGCWEDKKSNVTACKDTFRGRVCECP 447          
BLAST of CX308797 vs. ExPASy Swiss-Prot
Match: VSR7_ARATH (Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.892e-55
Identity = 95/128 (74.22%), Postives = 115/128 (89.84%), Query Frame = 1
Query:    7 ECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECP 390
            +CAE VIKSL + ++K+ +C+GDPEAD +NQVL+TEQ +QIG+G+RGDVTILPTLVINN QYRG+L++ AVLKAICAGF ET+EPAICL+  +ETNECLENNGGCWQD  ANITAC+DTFRGR+CECP
Sbjct:  321 DCAESVIKSLNLPIEKIKKCIGDPEADTENQVLRTEQVSQIGRGNRGDVTILPTLVINNAQYRGRLERTAVLKAICAGFNETSEPAICLNTGLETNECLENNGGCWQDTKANITACQDTFRGRLCECP 448          
BLAST of CX308797 vs. ExPASy Swiss-Prot
Match: VSR5_ARATH (Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.909e-52
Identity = 88/130 (67.69%), Postives = 114/130 (87.69%), Query Frame = 1
Query:    1 TKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECP 390
            ++ECAE +++SLG+ L+K+ +C+GDP+ADV+N+VLK E+  Q+G+ +RG VTI PTL+INN QYRGKL++ AVLKAIC+GF+E TEP+ICL+ DIETNECL  NGGCWQDK +N+TACKDTFRGRVCECP
Sbjct:  317 SRECAETIVESLGLSLEKIKKCIGDPDADVENEVLKAEEAFQLGQENRGIVTIFPTLMINNAQYRGKLERTAVLKAICSGFKERTEPSICLNSDIETNECLIENGGCWQDKRSNVTACKDTFRGRVCECP 446          
The following BLAST results are available for this feature:
BLAST of CX308797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VSR1_ARATH3.083e-6584.62Vacuolar-sorting receptor 1 OS=Arabidopsis thalian... [more]
VSR3_ARATH6.429e-6382.17Vacuolar-sorting receptor 3 OS=Arabidopsis thalian... [more]
VSR1_PEA1.583e-6179.84Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP... [more]
VSR4_ARATH4.607e-6179.07Vacuolar-sorting receptor 4 OS=Arabidopsis thalian... [more]
VSR2_ARATH4.768e-5875.97Vacuolar-sorting receptor 2 OS=Arabidopsis thalian... [more]
VSR6_ARATH1.696e-5571.54Vacuolar-sorting receptor 6 OS=Arabidopsis thalian... [more]
VSR7_ARATH2.892e-5574.22Vacuolar-sorting receptor 7 OS=Arabidopsis thalian... [more]
VSR5_ARATH3.909e-5267.69Vacuolar-sorting receptor 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC21003H10Rv AbsLeaSub1 Citrus clementina cDNA clone C21003H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308797 ID=CX308797; Name=CX308797; organism=Citrus clementina; type=EST; length=392bp
ACCAAGGAGTGTGCAGAGCAAGTTATCAAATCTCTTGGTGTTGACCTCAA
GAAGGTAGATGAATGTGTTGGAGATCCTGAGGCAGATGTGGACAATCAAG
TTCTTAAAACCGAACAAGATGCACAGATTGGAAAAGGCTCCCGTGGAGAT
GTTACTATACTGCCAACACTTGTTATTAACAATAGACAGTATAGAGGTAA
GTTGGACAAGGGAGCAGTTCTCAAGGCTATTTGTGCAGGTTTTCAGGAGA
CTACAGAGCCAGCCATATGCTTAAGTGAAGATATTGAAACTAATGAATGC
TTAGAAAACAATGGTGGGTGCTGGCAGGACAAAGCCGCTAACATAACAGC
ATGCAAGGATACTTTCCGAGGAAGAGTGTGCGAATGTCCTAT
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