CX308798

Overview
NameCX308798
Unique NameCX308798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length218
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig942 contig Ccv1_Contig942:507..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308798 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.008e-16
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = -3
Query:   28 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNH------DVQCSSLGQSSSLT 216
            QKVT+DNPSPRAYFRCS A S CPVKKKVQR  ED S LVATYEG HNH      +   +S G SS++T
Sbjct:  186 QKVTRDNPSPRAYFRCSFAPS-CPVKKKVQRSAEDPSLLVATYEGTHNHLGPNASEGDATSQGGSSTVT 253          
BLAST of CX308798 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.301e-15
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = -3
Query:   28 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 216
            QK+ K NP PRAY+RC+MA+ GCPV+K+VQRC ED+S L+ TYEG HNH +  +++  +S+ T
Sbjct:  322 QKMAKGNPCPRAYYRCTMAT-GCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAVAMASTTT 383          
BLAST of CX308798 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.301e-15
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = -3
Query:   16 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCS 216
            QKVT+DNPSPRAYF+C+ A S C VKKKVQR +ED+S LVATYEGEHNH +  S +  ++ L  + S
Sbjct:  156 QKVTRDNPSPRAYFKCACAPS-CSVKKKVQRSVEDQSVLVATYEGEHNHPMP-SQIDSNNGLNRHIS 220          
BLAST of CX308798 vs. ExPASy Swiss-Prot
Match: WRK60_ARATH (Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.899e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = -3
Query:   31 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSL 216
            QK+T+DNPSPRAYFRCS + S C VKKKVQR  ED SFLVATYEG HNH    +S+ ++  L
Sbjct:  156 QKITRDNPSPRAYFRCSFSPS-CLVKKKVQRSAEDPSFLVATYEGTHNHTGPHASVSRTVKL 216          
BLAST of CX308798 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.899e-15
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = -3
Query:   28 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 216
            QK+ K NP PRAY+RC+MA  GCPV+K+VQRC ED+S L+ TYEG HNH +  ++   +S+ T
Sbjct:  307 QKMAKGNPCPRAYYRCTMAG-GCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTT 368          
BLAST of CX308798 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.946e-15
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = -3
Query:   28 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 216
            QK+ K NP PRAY+RC+MA  GCPV+K+VQRC ED++ L+ TYEG HNH +  +++  +S+ T
Sbjct:  302 QKMAKGNPCPRAYYRCTMAV-GCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTT 363          
BLAST of CX308798 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.102e-14
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = -3
Query:   34 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSS 216
            QK+ K NP PRAY+RC++A+S CPV+K+VQRC ED S L++TYEG HNH +  S+   +S+
Sbjct:  201 QKIAKGNPCPRAYYRCTIAAS-CPVRKQVQRCSEDMSILISTYEGTHNHPLPMSATAMASA 260          
BLAST of CX308798 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.187e-14
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = -3
Query:   34 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSS 216
            QK  K NP PRAY+RC++A  GCPV+K+VQRC+ED S L+ TYEG HNH +   +   +S+
Sbjct:  245 QKTAKGNPCPRAYYRCTVAP-GCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMAST 304          
BLAST of CX308798 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.591e-13
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = -3
Query:   34 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSS 216
            QK+ K NP PRAY+RC++A  GCPV+K+VQRC +D S L+ TYEG H+H +  S+   +S+
Sbjct:  237 QKIAKGNPCPRAYYRCTVAP-GCPVRKQVQRCADDMSILITTYEGTHSHSLPLSATTMAST 296          
BLAST of CX308798 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.591e-13
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = -3
Query:   34 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSS 216
            QK+ K NP PRAY+RC+MA  GCPV+K+VQRC ED + L  TYEG HNH +  S+   +++
Sbjct:  249 QKMAKGNPCPRAYYRCTMAV-GCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAAT 308          
The following BLAST results are available for this feature:
BLAST of CX308798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
WRK18_ARATH2.008e-1665.22WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRKY6_ARATH1.301e-1555.56WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK40_ARATH1.301e-1561.19Probable WRKY transcription factor 40 OS=Arabidops... [more]
WRK60_ARATH2.899e-1564.52Probable WRKY transcription factor 60 OS=Arabidops... [more]
WRK31_ARATH2.899e-1555.56Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK42_ARATH4.946e-1553.97Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRK61_ARATH1.102e-1455.74Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRKY9_ARATH4.187e-1454.10Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK72_ARATH1.591e-1352.46Probable WRKY transcription factor 72 OS=Arabidops... [more]
WRK47_ARATH1.591e-1354.10Probable WRKY transcription factor 47 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC21003H12Rv AbsLeaSub1 Citrus clementina cDNA clone C21003H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308798 ID=CX308798; Name=CX308798; organism=Citrus clementina; type=EST; length=218bp
AATTGAGCTTTTGGGTGAGCAATAATTTGTTAAAGAGGAGGATTGCCCAA
GTGAGCTACATTGAACATCATGGTTGTGTTCTCCTTCATAAGTTGCAACG
AGAAATGACTTGTCCTCCATGCATCTTTGAACCTTTTTTTTTACAGGACA
TCCAGAAGAAGCCATTGAACATCTGAAATAAGCCCGAGGTGAGGGATTAT
CTTTAGTAACCTTTTGGC
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