CX308827

Overview
NameCX308827
Unique NameCX308827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length428
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig959 contig Ccv1_Contig959:1..428. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.313e-17
Identity = 53/145 (36.55%), Postives = 75/145 (51.72%), Query Frame = -1
Query:   24 QKVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV----------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 428
            +KVVV TK    D+QYVWE++A   S+ +  + D E L  RGT+ITL+LK DD+ E+ E  R++ LVK +S+F+S+PIY W EK+   E+                                       +WEL N+ KPIW+R P
Sbjct:  133 EKVVVTTKH-NDDEQYVWESQA-GGSFTVTRDVDGEPL-GRGTKITLFLK-DDQLEYLEERRLKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDEDEPKKENEGEVEEVDEEKEKDGKKKKKIKEVSHEWELINKQKPIWLRKP 273          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.551e-17
Identity = 51/144 (35.42%), Postives = 76/144 (52.78%), Query Frame = -1
Query:   24 QKVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV---------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 428
            +KV+V TK    D+QY+WE++A   S+ +  + D E+L  RGT+ITL+LKED + E+ E  RI+ LVK +S+F+S+PIY W EK+   E+                                      +W+L N+ KPIW+R P
Sbjct:  138 EKVIVTTKH-NDDEQYIWESQA-GGSFTVTRDVDGEQL-GRGTKITLFLKED-QLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDIEEVDEDKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKP 277          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 8.085e-16
Identity = 51/145 (35.17%), Postives = 73/145 (50.34%), Query Frame = -1
Query:   24 QKVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV----------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 428
            ++VVV TK    D+QYVWE++A  S  V R+ +  +  L RGT+ITLYLK DD+ E+ E  R++ L+K +S+F+S+PI  W EK+   E+                                       +W L N+ KPIWMR P
Sbjct:  134 ERVVVTTKH-NDDEQYVWESQAGGSFTVTRDTSGEQ--LGRGTKITLYLK-DDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTTEKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWSLVNKQKPIWMRKP 274          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.085e-16
Identity = 51/145 (35.17%), Postives = 73/145 (50.34%), Query Frame = -1
Query:   24 QKVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV----------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 428
            ++VVV TK    D+QYVWE++A  S  V R+ +  +  L RGT+ITLYLK DD+ E+ E  R++ L+K +S+F+S+PI  W EK+   E+                                       +W L N+ KPIWMR P
Sbjct:  134 ERVVVTTKH-NDDEQYVWESQAGGSFTVTRDTSGEQ--LGRGTKITLYLK-DDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTTEKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWSLVNKQKPIWMRKP 274          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 4.013e-15
Identity = 50/145 (34.48%), Postives = 73/145 (50.34%), Query Frame = -1
Query:   24 QKVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV----------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 428
            ++VVV TK    D+QYVWE++A  S  V R+ +  +  L RGT+ITLYLK DD+ E+ E  R++ LVK +S+F+S+PI  W EK+   E+                                       +W + N+ KPIW+R P
Sbjct:  134 ERVVVTTKH-NDDEQYVWESQAGGSFTVTRDTSGEQ--LGRGTKITLYLK-DDQLEYLEERRLKDLVKKHSEFISYPISLWTEKTTEKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWNVMNKQKPIWLRKP 274          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.013e-15
Identity = 50/145 (34.48%), Postives = 73/145 (50.34%), Query Frame = -1
Query:   24 QKVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV----------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 428
            ++VVV TK    D+QYVWE++A  S  V R+ +  +  L RGT+ITLYLK DD+ E+ E  R++ LVK +S+F+S+PI  W EK+   E+                                       +W + N+ KPIW+R P
Sbjct:  134 ERVVVTTKH-NDDEQYVWESQAGGSFTVTRDTSGEQ--LGRGTKITLYLK-DDQLEYLEERRLKDLVKKHSEFISYPISLWTEKTTEKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWNVMNKQKPIWLRKP 274          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.939e-15
Identity = 51/143 (35.66%), Postives = 72/143 (50.35%), Query Frame = -1
Query:   24 KVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV---------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 425
            KVVV TK    D+QYVWE++A  S  V R+ +   + L RGT++ LYLKED + E+ E  R++ LVK +S+F+S+PI  W EK+   E+                                      +W+L N+ KPIWMR P
Sbjct:  134 KVVVTTKH-NDDEQYVWESQAGGSFTVTRDTSG--EALGRGTKMVLYLKED-QMEYIEERRLKDLVKKHSEFISYPISLWIEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWDLVNKQKPIWMRKP 272          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.939e-15
Identity = 51/143 (35.66%), Postives = 72/143 (50.35%), Query Frame = -1
Query:   24 KVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV---------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 425
            KVVV TK    D+QYVWE++A  S  V R+ +   + L RGT++ LYLKED + E+ E  R++ LVK +S+F+S+PI  W EK+   E+                                      +W+L N+ KPIWMR P
Sbjct:  134 KVVVTTKH-NDDEQYVWESQAGGSFTVTRDTSG--ETLGRGTKMVLYLKED-QLEYLEERRLKDLVKKHSEFISYPISLWIEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWDLVNKQKPIWMRKP 272          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.167e-14
Identity = 50/144 (34.72%), Postives = 73/144 (50.69%), Query Frame = -1
Query:   24 QKVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVXXXXXXXXXXXXXXXXXXXXXXXXXXKYW---------DWELANETKPIWMRNP 428
            +KVVV TK    D+QYVWE++A   S+ +  +T  E L  RGT++ LYLKED + E+ E  R++ L+K +S+F+S+PI  W EK+   E+                          +           +W L N+ KPIWMR P
Sbjct:  133 EKVVVTTKH-NDDEQYVWESQA-GGSFTVTRDTSGENL-GRGTKMVLYLKED-QLEYLEERRLKDLIKKHSEFISYPISLWVEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKVKEVSNEWSLVNKQKPIWMRKP 272          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: ENPL_RABIT (Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.525e-14
Identity = 47/142 (33.10%), Postives = 66/142 (46.48%), Query Frame = -1
Query:   30 VVATKSPRSDKQYVWEAEADSSSYVIREETDPE-KLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTI-----------EVXXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMR 419
            V+ T    +D Q++WE++++  S +     DP    L RGT ITL LKE+   ++ E   I+ LVK YSQF++FPIY W  K+ T+           E                           + WDWEL N+ KPIW R
Sbjct:  130 VIVTSKHNNDTQHIWESDSNEFSVI----ADPRGNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPAGEEEAAKEEKEEAVDEAAVEEEEEEKKPKTKKVEKQVWDWELMNDIKPIWQR 266          
The following BLAST results are available for this feature:
BLAST of CX308827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
HSP81_ARATH7.313e-1736.55Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]
HSP83_IPONI9.551e-1735.42Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HSP81_ORYSJ8.085e-1635.17Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI8.085e-1635.17Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP83_ORYSJ4.013e-1534.48Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP82_ORYSJ4.013e-1534.48Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP83_ARATH8.939e-1535.66Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP82_ARATH8.939e-1535.66Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP80_SOLLC1.167e-1434.72Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
ENPL_RABIT1.525e-1433.10Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC21004C08Rv AbsLeaSub1 Citrus clementina cDNA clone C21004C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308827 ID=CX308827; Name=CX308827; organism=Citrus clementina; type=EST; length=428bp
TTTTTTTTTTTTTTTTTTTTTTTTGGGTTCCGCATCCATATAGGTTTTGT
TTCATTGGCCAGTTCCCAGTCCCAATACTTCTCAGTTTTAGTTGTTTTCT
TCGTTTTCTTTTCACCCTCCGGCTGTTCTTCCCCTTCTTCTGGTTTTTCC
TCCTCTTCCACCTCAATGGTCCTTGACTTTTCTTGCCAGGTATAGATGGG
GAAAGAAACAAACTGGGAGTAATTCTTCACCAAACCCTGGATTCTTGTTG
GTTCTGAAAATTCGTATTTGTCATCCTCCTTTAAATAAAGTGTGATTTGT
GTTCCACGCTTTAGGAGCTTCTCAGGATCAGTTTCTTCCCTGATCACATA
AGAGCTGCTGTCAGCTTCTGCTTCCCAAACATATTGCTTATCTGACCGTG
GGCTCTTTGTAGCCACTACAACCTTCTG
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