CX308830

Overview
NameCX308830
Unique NameCX308830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308830 vs. ExPASy Swiss-Prot
Match: JMT_BRARP (Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = -1
Query:    1 QGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFN------DGGYNVANCMRAVAEPLLVSQFGEAIIDELFK 285
            +G+IEEE ++ FN P Y  SP E+K  + KEGSF+ID LE+S V+W   + G   +++ D           G  VA  +RAV EP+L   FG+ ++DELF+
Sbjct:  267 EGIIEEENIDAFNAPYYAASPEELKMAIEKEGSFSIDRLEISPVDW---EGGSISDDSYDIVRFKPEALASGRRVAKTIRAVVEPMLEPTFGQKVMDELFE 364          
BLAST of CX308830 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.973e-15
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -1
Query:    1 QGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAF-------NDGGYNVANCMRAVAEPLLVSQFGEAIIDELFK 285
            +G+IEEEK++ FN P Y  S  E+K  + KEGSF+ID LE+S ++W   + G    E+ D            G  V+N +RAV EP+L   FGE ++DELF+
Sbjct:  263 EGIIEEEKIDAFNAPYYAASSEELKMVIEKEGSFSIDRLEISPIDW---EGGSISEESYDLVIRSKPEALASGRRVSNTIRAVVEPMLEPTFGENVMDELFE 361          
BLAST of CX308830 vs. ExPASy Swiss-Prot
Match: BAMT_ANTMA (Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.225e-13
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = -1
Query:    4 EMNIQGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNA---YQNGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGEAIIDELF 297
            +M  +GL++ + +  FNIP Y+P   E+++ ++ EGSFT+D LEV  V W+A     +  + + ++      G  VA+C+RA+ EP+L S FG  I+D LF
Sbjct:  236 DMVAEGLVKMDDLYSFNIPIYSPCTREVEAAILSEGSFTLDRLEVFRVCWDASDYTDDDDQQDPSIFGKQRSGKFVADCVRAITEPMLASHFGSTIMDLLF 336          
The following BLAST results are available for this feature:
BLAST of CX308830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
JMT_BRARP2.915e-1541.58Jasmonate O-methyltransferase OS=Brassica rapa sub... [more]
JMT_ARATH4.973e-1542.16Jasmonate O-methyltransferase OS=Arabidopsis thali... [more]
BAMT_ANTMA1.225e-1337.62Benzoate carboxyl methyltransferase OS=Antirrhinum... [more]
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Properties
Property NameValue
Genbank descriptionC21004C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308830 ID=CX308830; Name=CX308830; organism=Citrus clementina; type=EST; length=339bp
TTTAAACAGCTCATCAATGATTGCTTCACCAAACTGACTAACAAGCAAGG
GCTCGGCCACAGCTCTCATGCAATTCGCAACGTTGTATCCTCCATCATTA
AATGCATCAACGGCCTCGTTAAACTTAAAACCATTCTGATAAGCGTTCCA
GTTAACTTCAGAAACCTCAAGGTGATCAATGGTGAAGGATCCTTCCTTTA
TAACCTCCGATTTTATTTCAGCTGGTGATGGTGTATACTGCGGAATGTTG
AAACAATTCACTTTCTCTTCTTCTATGAGTCCCTGTATATTCATCTCAGG
AGGTTAGCTAGCTTGGCTGGTATGGTAAACCTCTTAGAT
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