CX308836

Overview
NameCX308836
Unique NameCX308836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9548 contig Ccv1_Contig9548:465..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: UMPK_ARATH (Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.198e-40
Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = 3
Query:    6 NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVFTPKDEKAAA 308
            NEENRAAFE VT+IEP+FVLFFDC EEEME+R+L RNQGREDDN+ETIRKRFKVFLESSLPV+ YYEAKGKVRKI+AAKP   VF+ VKA+F+P+ EK  A
Sbjct:  102 NEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVKAIFSPEAEKVEA 202          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KAD_PRUAR (Adenylate kinase OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.053e-24
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 3
Query:    6 NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVFTP 287
            +EENR AFE     EP+ VLFFDC E+EM +R+LNRNQGR DDN++TI+KR ++F E + PV+ YY  +GK+ KI+A     E+F+ V+ +F P
Sbjct:  135 SEENRKAFEQTIGAEPDVVLFFDCPEQEMVKRVLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHKINAVGTVDEIFEKVRPIFAP 228          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KCY_XENLA (UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 3
Query:    6 NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVF 281
            NE+N   +E     K +  FVLFFDC  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE +GKVRK+DA+K   EVF  V+ +F
Sbjct:   97 NEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKRGKVRKVDASKSVDEVFTKVQNIF 192          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KCY_BOVIN (UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.881e-15
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 3
Query:   42 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVF 281
            K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKVRKIDA+K   EVFD V  +F
Sbjct:  111 KADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSVDEVFDEVVKIF 192          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KCY_XENTR (UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.069e-15
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 3
Query:    6 NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVF 281
            NE+N   +E     K +  FVLFFDC  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+K+DA+K   EVF  V+ +F
Sbjct:   97 NEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKTGKVKKVDASKSVDEVFTKVQDIF 192          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KCY_PIG (UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.647e-15
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 3
Query:   42 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVF 281
            K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K   EVFD V  +F
Sbjct:  111 KADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIF 192          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KCY_HUMAN (UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.647e-15
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 3
Query:   42 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVF 281
            K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K   EVFD V  +F
Sbjct:  111 KADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 192          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KCY_MOUSE (UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   42 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVF 281
            K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +LES+ P++  YE  GKV+KIDA+K   EVF  V  +F
Sbjct:  111 KADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVDEVFGEVVKIF 192          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: UMPK_YEAST (Uridylate kinase OS=Saccharomyces cerevisiae GN=URA6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 3
Query:   45 IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVK 272
            +E +F+LFFDC E+ M  R+L R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV ++   +   +V+  V+
Sbjct:  120 VESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQ 197          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KCY_RAT (UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   42 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVF 281
            K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +LES+ P++  YE  GKV+KIDA+K   EVF  V  +F
Sbjct:  111 KADVSFVLFFDCNNEICIDRCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVDEVFGDVMKIF 192          
The following BLAST results are available for this feature:
BLAST of CX308836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UMPK_ARATH1.198e-4078.22Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 P... [more]
KAD_PRUAR2.053e-2452.13Adenylate kinase OS=Prunus armeniaca PE=2 SV=1[more]
KCY_XENLA1.021e-1543.75UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=... [more]
KCY_BOVIN3.881e-1548.78UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2[more]
KCY_XENTR5.069e-1542.71UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2... [more]
KCY_PIG8.647e-1547.56UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1[more]
KCY_HUMAN8.647e-1547.56UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3[more]
KCY_MOUSE2.516e-1447.56UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1[more]
UMPK_YEAST4.291e-1443.59Uridylate kinase OS=Saccharomyces cerevisiae GN=UR... [more]
KCY_RAT4.291e-1447.56UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC21004D06Rv AbsLeaSub1 Citrus clementina cDNA clone C21004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308836 ID=CX308836; Name=CX308836; organism=Citrus clementina; type=EST; length=380bp
GCGGGAACGAGGAAAATCGTGCTGCATTTGAAGCTGTTACCAAAATTGAG
CCAGAATTCGTTCTGTTTTTTGACTGTTCTGAGGAGGAGATGGAGAGGCG
CATTTTGAATAGGAATCAGGGAAGAGAAGATGATAACGTTGAGACAATTA
GGAAGCGGTTTAAGGTTTTCTTAGAATCTAGTCTCCCTGTGGTTCAATAT
TATGAAGCTAAGGGTAAAGTTCGGAAGATTGATGCTGCAAAGCCTGCTGC
AGAGGTTTTTGATGCTGTTAAAGCTGTTTTTACCCCAAAAGATGAGAAGG
CTGCTGCTTAGGTCTTCTCTGTCCAGAGTATCAGATTTAATATCAAGGTG
GTGGTATTGTTGTTGGCTGCTGCCTATTGT
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