CX308874

Overview
NameCX308874
Unique NameCX308874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length374
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308874_ssr343 microsatellite CX308874_ssr343:343..362. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig425 contig Ccv1_Contig425:1..365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.447e-32
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = -3
Query:    1 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 210
            MSEFD  IP+AFDPFAEANAEDSGAG+KDYVH+RVQQRNGRKSLTTVQGLKK++SYNKILKDLKKEFCCN
Sbjct:    1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.916e-31
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = -3
Query:    1 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 210
            MSE D+Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCN
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 4.916e-31
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = -3
Query:    1 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 210
            MSE D+Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCN
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.187e-30
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = -3
Query:    1 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 210
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 72          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.187e-30
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = -3
Query:    1 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 210
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 72          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.187e-30
Identity = 59/70 (84.29%), Postives = 68/70 (97.14%), Query Frame = -3
Query:    1 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 210
            MS+ + Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY+KILKDLKKEFCCN
Sbjct:    1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.099e-30
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = -3
Query:    1 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 210
            MS+ D QIP+AFDPF+EANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN
Sbjct:    1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 72          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.211e-29
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = -3
Query:    1 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 210
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSY+KILKDLKKEFCCN
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCN 72          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.694e-23
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = -3
Query:    1 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 210
            M + D QIP++FDPFAEA   D+   +K+YVHIR+QQRNGRKSLTTVQGLKKE SY+KILKDLKK  CCN
Sbjct:    1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = -3
Query:    1 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 180
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CN
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70          
The following BLAST results are available for this feature:
BLAST of CX308874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SUI1_SALBA4.447e-3290.00Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_BRAOL4.916e-3187.14Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI11_ARATH4.916e-3187.14Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_ORYSJ3.187e-3087.50Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI3.187e-3087.50Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI12_ARATH3.187e-3084.29Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI1_SPOST7.099e-3086.11Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_MAIZE1.211e-2986.11Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_PIMBR1.694e-2371.43Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1_PONAB5.461e-1454.84Eukaryotic translation initiation factor 1 OS=Pong... [more]

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Properties
Property NameValue
Genbank descriptionC21004H01Rv AbsLeaSub1 Citrus clementina cDNA clone C21004H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308874 ID=CX308874; Name=CX308874; organism=Citrus clementina; type=EST; length=374bp
ATTACAGCAGAACTCTTTCTTGAGGTCCTTGAGAATCTTGTTGTAGCTGA
ATTCTTTCTTCAACCCTTGCACAGTTGTCAGGCTTTTCCTCCCATTACGT
TGCTGCACGCGAATATGCACATAATCTTTTGAACCAGCACCTGAGTCCTC
AGCATTTGCCTCAGCAAAGGGATCAAAGGCAGATGGAATCTGGGTGTCAA
ATTCAGACATGAAACTTGGTTGTTGGAGTGTCAAAGAGTCCGTAACCAGC
AAGAAATTGGCTTCAATTCACTTAAATTGCTCTTAGCTTAAGAGGAAGAT
TGCGAATCAAACTGCCTTACGAGAGCGGAAACAAGAGAAGCCAGAGAGAG
AGAGAGAGAGAGACAGAGATCCCG
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