CX308883

Overview
NameCX308883
Unique NameCX308883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX308883 vs. ExPASy Swiss-Prot
Match: GUN2_PERAE (Endoglucanase 2 (Fragment) OS=Persea americana GN=CEL2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 34/57 (59.65%), Postives = 38/57 (66.67%), Query Frame = -3 
Query:  238 SRSPNPNVLTGAILGGPXXXXXXXXXXXNYQQSESATYINAPFVGAVAFFSSKTTTN 408
            S SPNPN+L GAILGGP           NYQQSE ATYINAP VGA+AFF++    N
Sbjct:   74 SSSPNPNILVGAILGGPDSRDSFSDDRNNYQQSEPATYINAPLVGALAFFAANPVAN 130
[Close]
BLAST of CX308883 vs. ExPASy Swiss-Prot
Match: GUN1_PERAE (Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.528e-11
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = -3 
Query:  241 SRSPNPNVLTGAILGGPXXXXXXXXXXXNYQQSESATYINAPFVGAVAFFSSKTTT 408
            S  PNPN+L GAILGGP           NYQQSE ATYINAP VGA+AFF++   T
Sbjct:  438 SSPPNPNILVGAILGGPDNRDSFSDDRNNYQQSEPATYINAPLVGALAFFAANPVT 493
The following BLAST results are available for this feature:
BLAST of CX308883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GUN2_PERAE1.517e-1159.65Endoglucanase 2 (Fragment) OS=Persea americana GN=... [more]
GUN1_PERAE7.528e-1158.93Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionC21005A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21005A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308883 ID=CX308883; Name=CX308883; organism=Citrus clementina; type=EST; length=410bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAACTCAAAGTTGGCAAATATAT
CTTTTTTGCCATAATTGATATATTACTTACCATATTACTCAAAAACTCAA
GAGAAGAATTATTAGAGGTTACAGTTCTGACGTGGAATTGGAAGCATTGT
AAACCAAACTTCTCAAATTCTCACATTACACAGGATAAGACAGATTCATG
CCAATCCTCAAGAAAGAAACAAAGAACATTTTAGTTAATTTGTGGTGGTT
TTGGATGAGAAGAAAGCAACAGCACCAACAAACGGCGCATTGATGTATGT
AGCTGATTCTGACTGCTGATAATTATTACGATCATCGGCAAAATTGTCTC
TATTATCAGGCCCACCTAATATAGCTCCAGTGAGAACATTTGGATTGGGT
GATCTAGAGT
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