CX308884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_ARATH (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.100e-37 Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 3 Query: 24 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGVP 254 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGN EEY+DGQ +GNLGEILIRCNNVLY+RGVP Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVP 77
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_XENLA (Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.234e-29 Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 3 Query: 30 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251 ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG SG+LGE+LIRCNNVLY+RGV Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_MOUSE (Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.234e-29 Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 3 Query: 30 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251 ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG SG+LGE+LIRCNNVLY+RGV Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_HUMAN (Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.234e-29 Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 3 Query: 30 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251 ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG SG+LGE+LIRCNNVLY+RGV Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_BOVIN (Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 1.234e-29 Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 3 Query: 30 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251 ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG SG+LGE+LIRCNNVLY+RGV Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_CAEEL (Probable small nuclear ribonucleoprotein F OS=Caenorhabditis elegans GN=snr-5 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 2.327e-28 Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 3 Query: 27 ATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251 A PVNPKPFLN+LTGK V+ KLKWGMEYKG L +VDSYMNLQL +AEEY+DG GNLGEILIRCNNVLY+ GV Sbjct: 3 AVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNVLYVGGV 77
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_DROME (Small nuclear ribonucleoprotein F OS=Drosophila melanogaster GN=DebB PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 6.772e-28 Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 3 Query: 27 ATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251 A +P+NPKPFLN LTGK V+VKLKWG EYKGFL SVD YMN+QL N EE ++G +GNLGE+LIRCNNVLY++G+ Sbjct: 3 AGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGM 77
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_SCHPO (Probable small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe GN=smf1 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.663e-24 Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 3 Query: 24 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYL 242 M+ +PVNPKPFL L GK V+V+LKWG EYKG L SVDSYMNLQL NAEE VDG +G+LGEILIRCNNVL++ Sbjct: 1 MSFVPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNVLWV 73
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_DICDI (Small nuclear ribonucleoprotein F OS=Dictyostelium discoideum GN=snrpf PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 3.599e-21 Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 3 Query: 45 PKPFLNNLTGKTVIVKLKWG-MEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251 PKPFL +L GK + V+LKWG MEY+G LASVDSYMNLQL EE++DG G LGE+LIRCNNVL++RG+ Sbjct: 9 PKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLIRCNNVLFVRGI 78
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_NEUCR (Probable small nuclear ribonucleoprotein F OS=Neurospora crassa GN=B2O8.190 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.975e-19 Identity = 41/75 (54.67%), Postives = 59/75 (78.67%), Query Frame = 3 Query: 24 MATIPVNPKPFLNNLTGKTVIVKLKWG-MEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLR 245 M+ +PVNP+PFL +L V ++LKWG EY G L S+DSYMN+QL + +EY++ +F+G LG++LIRCNNVLY++ Sbjct: 1 MSFVPVNPRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIRCNNVLYIK 75 The following BLAST results are available for this feature:
BLAST of CX308884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX308884 ID=CX308884; Name=CX308884; organism=Citrus clementina; type=EST; length=360bpback to top |