CX308899

Overview
NameCX308899
Unique NameCX308899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length301
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10316 contig Ccv1_Contig10316:507..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308899 vs. ExPASy Swiss-Prot
Match: ACLY_DICDI (Probable ATP-citrate synthase OS=Dictyostelium discoideum GN=acly PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.240e-38
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = -3
Query:    3 VGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD 296
            VGGIQAG FKIG+TAGTI  I+ CKLYR GSVGFVSKSGG+SNE+YN ++R TDGIYEGIAIGGD FPGSTL+DH LR+  +P+V+M+V+LGELGG D
Sbjct:  153 VGGIQAGCFKIGNTAGTIVYIMACKLYRSGSVGFVSKSGGLSNEMYNVLSRCTDGIYEGIAIGGDAFPGSTLTDHALRYEKLPEVQMIVILGELGGWD 250          
BLAST of CX308899 vs. ExPASy Swiss-Prot
Match: ACLY_SHEEP (ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.342e-34
Identity = 65/98 (66.33%), Postives = 81/98 (82.65%), Query Frame = -3
Query:    3 VGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD 296
            VGGI+ G FKIG+T G +DNI+  KLYRPGSV +VS+SGGMSNEL N I+R TDG+YEG+AIGGD +PGST  DH+LR+ + P VKM+VVLGE+GG +
Sbjct:  626 VGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTE 723          
BLAST of CX308899 vs. ExPASy Swiss-Prot
Match: ACLY_RAT (ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.342e-34
Identity = 65/98 (66.33%), Postives = 81/98 (82.65%), Query Frame = -3
Query:    3 VGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD 296
            VGGI+ G FKIG+T G +DNI+  KLYRPGSV +VS+SGGMSNEL N I+R TDG+YEG+AIGGD +PGST  DH+LR+ + P VKM+VVLGE+GG +
Sbjct:  625 VGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTE 722          
BLAST of CX308899 vs. ExPASy Swiss-Prot
Match: ACLY_MOUSE (ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.342e-34
Identity = 65/98 (66.33%), Postives = 81/98 (82.65%), Query Frame = -3
Query:    3 VGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD 296
            VGGI+ G FKIG+T G +DNI+  KLYRPGSV +VS+SGGMSNEL N I+R TDG+YEG+AIGGD +PGST  DH+LR+ + P VKM+VVLGE+GG +
Sbjct:  616 VGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTE 713          
BLAST of CX308899 vs. ExPASy Swiss-Prot
Match: ACLY_HUMAN (ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 6.342e-34
Identity = 65/98 (66.33%), Postives = 81/98 (82.65%), Query Frame = -3
Query:    3 VGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD 296
            VGGI+ G FKIG+T G +DNI+  KLYRPGSV +VS+SGGMSNEL N I+R TDG+YEG+AIGGD +PGST  DH+LR+ + P VKM+VVLGE+GG +
Sbjct:  626 VGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTE 723          
BLAST of CX308899 vs. ExPASy Swiss-Prot
Match: ACLY_BOVIN (ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.369e-33
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = -3
Query:    3 VGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD 296
            VGGI+ G FKIG+T G +DNI+  KLYRPGSV +VS+SGGMSNEL N I+R TDG+YEG+AIGGD +PGST  DH+LR+ +   VKM+VVLGE+GG +
Sbjct:  616 VGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTAGVKMIVVLGEIGGTE 713          
BLAST of CX308899 vs. ExPASy Swiss-Prot
Match: ACL1_SCHPO (Probable ATP-citrate synthase subunit 1 OS=Schizosaccharomyces pombe GN=SPBC1703.07 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.753e-32
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = -3
Query:    9 VGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGG 296
            VGGI+ G FKIG+T G +DNI+  KLYRPGSV +VSKSGGMSNEL N I+  TDG+YEGIAIGGD +PG+T  DH++RF   P  K+MV+LGE+GG
Sbjct:  146 VGGIKPGCFKIGNTGGMMDNIVASKLYRPGSVAYVSKSGGMSNELNNIISHTTDGVYEGIAIGGDRYPGTTFIDHLIRFEADPACKLMVLLGEVGG 241          
BLAST of CX308899 vs. ExPASy Swiss-Prot
Match: ACLY_CAEEL (Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.322e-31
Identity = 62/96 (64.58%), Postives = 81/96 (84.38%), Query Frame = -3
Query:    9 VGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGG 296
            VGGI+ G FKIG+T G +DNI+  KLYRPGSV +VS+SGGMSNEL N I++ T+G+YEGIAIGGD +PGST +DH++R+ N  +VKM+V+LGE+GG
Sbjct:  626 VGGIKPGCFKIGNTGGMMDNILASKLYRPGSVAYVSRSGGMSNELNNIISQNTNGVYEGIAIGGDRYPGSTYTDHVIRYQNDDRVKMIVLLGEVGG 721          
BLAST of CX308899 vs. ExPASy Swiss-Prot
Match: ACL1_NEUCR (Probable ATP-citrate synthase subunit 1 OS=Neurospora crassa GN=B14D6.310 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.848e-31
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = -3
Query:    9 VGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGG 296
            VGGI+ G FKIG+T G +DNI+  KLYR GSVG+VSKSGGMSNEL N I++ TDG+YEG+AIGGD +PG+T  DH+LR+   P  K++V+LGE+GG
Sbjct:  182 VGGIKPGCFKIGNTGGMMDNIVASKLYRKGSVGYVSKSGGMSNELNNIISQTTDGVYEGVAIGGDRYPGTTFIDHLLRYQADPDCKILVLLGEVGG 277          
BLAST of CX308899 vs. ExPASy Swiss-Prot
Match: ACL1_SORMA (ATP-citrate synthase subunit 1 OS=Sordaria macrospora GN=ACL1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.025e-31
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = -3
Query:    9 VGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGG 296
            VGGI+ G FKIG+T G +DNI+  KLYR GSVG+VSKSGGMSNEL N I++ TDG+YEG+AIGGD +PG+T  DH+LR+   P  K++V+LGE+GG
Sbjct:  186 VGGIKPGCFKIGNTGGMMDNIVASKLYRKGSVGYVSKSGGMSNELNNIISQTTDGVYEGVAIGGDRYPGTTFIDHLLRYQADPACKILVLLGEVGG 281          
The following BLAST results are available for this feature:
BLAST of CX308899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ACLY_DICDI7.240e-3874.49Probable ATP-citrate synthase OS=Dictyostelium dis... [more]
ACLY_SHEEP6.342e-3466.33ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV... [more]
ACLY_RAT6.342e-3466.33ATP-citrate synthase OS=Rattus norvegicus GN=Acly ... [more]
ACLY_MOUSE6.342e-3466.33ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 ... [more]
ACLY_HUMAN6.342e-3466.33ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 ... [more]
ACLY_BOVIN5.369e-3365.31ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV... [more]
ACL1_SCHPO7.753e-3265.63Probable ATP-citrate synthase subunit 1 OS=Schizos... [more]
ACLY_CAEEL1.322e-3164.58Probable ATP-citrate synthase OS=Caenorhabditis el... [more]
ACL1_NEUCR3.848e-3163.54Probable ATP-citrate synthase subunit 1 OS=Neurosp... [more]
ACL1_SORMA5.025e-3163.54ATP-citrate synthase subunit 1 OS=Sordaria macrosp... [more]
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Properties
Property NameValue
Genbank descriptionC21005D03Rv AbsLeaSub1 Citrus clementina cDNA clone C21005D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308899 ID=CX308899; Name=CX308899; organism=Citrus clementina; type=EST; length=301bp
TCATCCCGTCCTCCAAGTTCACCAAGAACAACCATCATTTTAACCTGTGG
GATGTTGTTAAACCGCAAAATGTGATCAGAAAGAGTGGAGCCGGGGAACA
CATCTCCTCCAATTGCAATACCTTCATAGATTCCATCTGTTACACGAGCA
ATAGTGTTGTATAGTTCATTAGACATGCCACCAGATTTGGAGACAAAACC
AACAGATCCAGGCCTGTAGAGTTTGCAATGAATGATGTTATCAATGGTTC
CGGCTGTGTCACCTATCTTAAAAGCTCCAGCTTGAATTCCTCCAACACCC
G
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